Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2977 and DvMF_2978 are separated by 177 nucleotides DvMF_2978 and DvMF_2979 are separated by 139 nucleotides DvMF_2979 and DvMF_2980 are separated by 285 nucleotides DvMF_2980 and DvMF_2981 are separated by 110 nucleotides
DvMF_2977: DvMF_2977 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 3,751,742 to 3,752,860
_2977
DvMF_2978: DvMF_2978 - hypothetical protein (RefSeq), at 3,753,038 to 3,753,370
_2978
DvMF_2979: DvMF_2979 - NADPH-dependent FMN reductase (RefSeq), at 3,753,510 to 3,754,124
_2979
DvMF_2980: DvMF_2980 - Rhodanese domain protein (RefSeq), at 3,754,410 to 3,754,916
_2980
DvMF_2981: DvMF_2981 - VanZ family protein (RefSeq), at 3,755,027 to 3,755,596
_2981
Position (kb)
3753
3754
3755 Strain fitness (log2 ratio)
-2
-1
0
1 at 3752.966 kb on - strand at 3752.996 kb on + strand at 3753.151 kb on - strand, within DvMF_2978 at 3753.232 kb on + strand, within DvMF_2978 at 3753.439 kb on - strand at 3753.443 kb on + strand at 3753.564 kb on - strand at 3753.579 kb on - strand, within DvMF_2979 at 3753.701 kb on - strand, within DvMF_2979 at 3754.127 kb on - strand at 3754.151 kb on - strand at 3754.289 kb on + strand at 3754.364 kb on - strand at 3754.381 kb on - strand at 3754.381 kb on - strand at 3754.381 kb on - strand at 3754.579 kb on - strand, within DvMF_2980 at 3754.742 kb on - strand, within DvMF_2980 at 3754.867 kb on + strand at 3755.058 kb on + strand at 3755.066 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml remove 3,752,966 - -0.5 3,752,996 + -0.3 3,753,151 - DvMF_2978 0.34 -1.9 3,753,232 + DvMF_2978 0.58 -0.0 3,753,439 - -0.4 3,753,443 + -1.3 3,753,564 - -0.7 3,753,579 - DvMF_2979 0.11 -2.3 3,753,701 - DvMF_2979 0.31 -0.9 3,754,127 - -0.2 3,754,151 - -0.1 3,754,289 + -0.6 3,754,364 - -0.7 3,754,381 - -0.5 3,754,381 - +0.2 3,754,381 - -0.4 3,754,579 - DvMF_2980 0.33 -0.3 3,754,742 - DvMF_2980 0.65 -1.0 3,754,867 + -0.2 3,755,058 + -0.3 3,755,066 - -0.8
Or see this region's nucleotide sequence