Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2963 and DvMF_2964 are separated by 329 nucleotides DvMF_2964 and DvMF_2965 are separated by 203 nucleotides DvMF_2965 and DvMF_2966 are separated by 172 nucleotides DvMF_2966 and DvMF_2967 are separated by 184 nucleotides
DvMF_2963: DvMF_2963 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 3,736,161 to 3,739,916
_2963
DvMF_2964: DvMF_2964 - RNP-1 like RNA-binding protein (RefSeq), at 3,740,246 to 3,740,512
_2964
DvMF_2965: DvMF_2965 - 17 kDa surface antigen (RefSeq), at 3,740,716 to 3,741,174
_2965
DvMF_2966: DvMF_2966 - hypothetical protein (RefSeq), at 3,741,347 to 3,741,901
_2966
DvMF_2967: DvMF_2967 - RarD protein, DMT superfamily transporter (RefSeq), at 3,742,086 to 3,743,000
_2967
Position (kb)
3740
3741
3742 Strain fitness (log2 ratio)
-2
-1
0
1 at 3739.794 kb on - strand at 3739.794 kb on - strand at 3740.114 kb on + strand at 3740.189 kb on - strand at 3740.283 kb on - strand, within DvMF_2964 at 3740.378 kb on + strand, within DvMF_2964 at 3740.398 kb on + strand, within DvMF_2964 at 3740.482 kb on + strand, within DvMF_2964 at 3740.764 kb on - strand, within DvMF_2965 at 3740.846 kb on + strand, within DvMF_2965 at 3741.196 kb on - strand at 3741.601 kb on - strand, within DvMF_2966 at 3741.601 kb on - strand, within DvMF_2966 at 3741.617 kb on - strand, within DvMF_2966 at 3741.634 kb on + strand, within DvMF_2966 at 3741.669 kb on - strand, within DvMF_2966 at 3741.916 kb on - strand at 3741.918 kb on + strand at 3742.027 kb on - strand at 3742.143 kb on - strand at 3742.152 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml remove 3,739,794 - +0.5 3,739,794 - -2.0 3,740,114 + -0.2 3,740,189 - +0.8 3,740,283 - DvMF_2964 0.14 -1.3 3,740,378 + DvMF_2964 0.49 -0.4 3,740,398 + DvMF_2964 0.57 -0.2 3,740,482 + DvMF_2964 0.88 -0.6 3,740,764 - DvMF_2965 0.10 -2.7 3,740,846 + DvMF_2965 0.28 -1.2 3,741,196 - -0.7 3,741,601 - DvMF_2966 0.46 -1.2 3,741,601 - DvMF_2966 0.46 -1.9 3,741,617 - DvMF_2966 0.49 -0.9 3,741,634 + DvMF_2966 0.52 -0.3 3,741,669 - DvMF_2966 0.58 +0.2 3,741,916 - -1.2 3,741,918 + -0.3 3,742,027 - -1.1 3,742,143 - -1.3 3,742,152 + -0.1
Or see this region's nucleotide sequence