Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2965

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2963 and DvMF_2964 are separated by 329 nucleotidesDvMF_2964 and DvMF_2965 are separated by 203 nucleotidesDvMF_2965 and DvMF_2966 are separated by 172 nucleotidesDvMF_2966 and DvMF_2967 are separated by 184 nucleotides DvMF_2963: DvMF_2963 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 3,736,161 to 3,739,916 _2963 DvMF_2964: DvMF_2964 - RNP-1 like RNA-binding protein (RefSeq), at 3,740,246 to 3,740,512 _2964 DvMF_2965: DvMF_2965 - 17 kDa surface antigen (RefSeq), at 3,740,716 to 3,741,174 _2965 DvMF_2966: DvMF_2966 - hypothetical protein (RefSeq), at 3,741,347 to 3,741,901 _2966 DvMF_2967: DvMF_2967 - RarD protein, DMT superfamily transporter (RefSeq), at 3,742,086 to 3,743,000 _2967 Position (kb) 3740 3741 3742Strain fitness (log2 ratio) -2 -1 0 1at 3739.794 kb on - strandat 3739.794 kb on - strandat 3740.114 kb on + strandat 3740.189 kb on - strandat 3740.283 kb on - strand, within DvMF_2964at 3740.378 kb on + strand, within DvMF_2964at 3740.398 kb on + strand, within DvMF_2964at 3740.482 kb on + strand, within DvMF_2964at 3740.764 kb on - strand, within DvMF_2965at 3740.846 kb on + strand, within DvMF_2965at 3741.196 kb on - strandat 3741.601 kb on - strand, within DvMF_2966at 3741.601 kb on - strand, within DvMF_2966at 3741.617 kb on - strand, within DvMF_2966at 3741.634 kb on + strand, within DvMF_2966at 3741.669 kb on - strand, within DvMF_2966at 3741.916 kb on - strandat 3741.918 kb on + strandat 3742.027 kb on - strandat 3742.143 kb on - strandat 3742.152 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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3,739,794 - +0.5
3,739,794 - -2.0
3,740,114 + -0.2
3,740,189 - +0.8
3,740,283 - DvMF_2964 0.14 -1.3
3,740,378 + DvMF_2964 0.49 -0.4
3,740,398 + DvMF_2964 0.57 -0.2
3,740,482 + DvMF_2964 0.88 -0.6
3,740,764 - DvMF_2965 0.10 -2.7
3,740,846 + DvMF_2965 0.28 -1.2
3,741,196 - -0.7
3,741,601 - DvMF_2966 0.46 -1.2
3,741,601 - DvMF_2966 0.46 -1.9
3,741,617 - DvMF_2966 0.49 -0.9
3,741,634 + DvMF_2966 0.52 -0.3
3,741,669 - DvMF_2966 0.58 +0.2
3,741,916 - -1.2
3,741,918 + -0.3
3,742,027 - -1.1
3,742,143 - -1.3
3,742,152 + -0.1

Or see this region's nucleotide sequence