Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2953

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2952 and DvMF_2953 are separated by 185 nucleotidesDvMF_2953 and DvMF_2954 overlap by 1 nucleotides DvMF_2952: DvMF_2952 - metal dependent phosphohydrolase (RefSeq), at 3,724,329 to 3,724,952 _2952 DvMF_2953: DvMF_2953 - protein of unknown function DUF214 (RefSeq), at 3,725,138 to 3,726,358 _2953 DvMF_2954: DvMF_2954 - protein of unknown function DUF214 (RefSeq), at 3,726,358 to 3,727,689 _2954 Position (kb) 3725 3726 3727Strain fitness (log2 ratio) -2 -1 0 1at 3724.163 kb on - strandat 3724.644 kb on - strand, within DvMF_2952at 3724.688 kb on + strand, within DvMF_2952at 3724.754 kb on - strand, within DvMF_2952at 3724.758 kb on - strand, within DvMF_2952at 3724.991 kb on + strandat 3725.012 kb on + strandat 3725.012 kb on + strandat 3725.056 kb on - strandat 3725.056 kb on - strandat 3725.088 kb on + strandat 3725.286 kb on + strand, within DvMF_2953at 3725.525 kb on - strand, within DvMF_2953at 3725.883 kb on + strand, within DvMF_2953at 3726.110 kb on + strand, within DvMF_2953at 3726.117 kb on - strand, within DvMF_2953at 3726.127 kb on + strand, within DvMF_2953at 3726.248 kb on + strandat 3726.265 kb on + strandat 3726.452 kb on + strandat 3726.618 kb on - strand, within DvMF_2954at 3726.736 kb on - strand, within DvMF_2954at 3726.850 kb on + strand, within DvMF_2954at 3727.100 kb on + strand, within DvMF_2954at 3727.266 kb on - strand, within DvMF_2954at 3727.341 kb on + strand, within DvMF_2954at 3727.341 kb on + strand, within DvMF_2954at 3727.341 kb on + strand, within DvMF_2954at 3727.341 kb on + strand, within DvMF_2954at 3727.341 kb on + strand, within DvMF_2954at 3727.347 kb on + strand, within DvMF_2954at 3727.349 kb on - strand, within DvMF_2954

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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3,724,163 - -0.3
3,724,644 - DvMF_2952 0.50 +1.1
3,724,688 + DvMF_2952 0.58 -0.1
3,724,754 - DvMF_2952 0.68 -0.5
3,724,758 - DvMF_2952 0.69 -1.8
3,724,991 + +0.4
3,725,012 + -0.9
3,725,012 + -0.6
3,725,056 - -0.2
3,725,056 - -0.2
3,725,088 + -0.4
3,725,286 + DvMF_2953 0.12 -1.4
3,725,525 - DvMF_2953 0.32 -1.3
3,725,883 + DvMF_2953 0.61 -0.5
3,726,110 + DvMF_2953 0.80 -1.2
3,726,117 - DvMF_2953 0.80 -2.2
3,726,127 + DvMF_2953 0.81 -0.7
3,726,248 + -0.4
3,726,265 + -1.2
3,726,452 + -1.2
3,726,618 - DvMF_2954 0.20 -1.6
3,726,736 - DvMF_2954 0.28 -1.0
3,726,850 + DvMF_2954 0.37 -1.1
3,727,100 + DvMF_2954 0.56 -1.3
3,727,266 - DvMF_2954 0.68 -1.6
3,727,341 + DvMF_2954 0.74 -2.1
3,727,341 + DvMF_2954 0.74 -1.1
3,727,341 + DvMF_2954 0.74 -1.8
3,727,341 + DvMF_2954 0.74 -1.9
3,727,341 + DvMF_2954 0.74 -0.4
3,727,347 + DvMF_2954 0.74 -1.6
3,727,349 - DvMF_2954 0.74 -1.2

Or see this region's nucleotide sequence