Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2767 and DvMF_2768 are separated by 269 nucleotides DvMF_2768 and DvMF_2769 are separated by 69 nucleotides DvMF_2769 and DvMF_2770 are separated by 232 nucleotides DvMF_2770 and DvMF_2771 are separated by 99 nucleotides
DvMF_2767: DvMF_2767 - uroporphyrin-III C-methyltransferase (RefSeq), at 3,500,840 to 3,502,351
_2767
DvMF_2768: DvMF_2768 - MOSC domain containing protein (RefSeq), at 3,502,621 to 3,503,055
_2768
DvMF_2769: DvMF_2769 - phosphoribosylglycinamide formyltransferase (RefSeq), at 3,503,125 to 3,503,808
_2769
DvMF_2770: DvMF_2770 - no description, at 3,504,041 to 3,504,124
_2770
DvMF_2771: DvMF_2771 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 3,504,224 to 3,504,835
_2771
Position (kb)
3503
3504 Strain fitness (log2 ratio)
-1
0
1 at 3502.471 kb on + strand at 3502.497 kb on + strand at 3502.623 kb on - strand at 3503.120 kb on + strand at 3503.327 kb on + strand, within DvMF_2769 at 3503.521 kb on - strand, within DvMF_2769 at 3503.536 kb on - strand, within DvMF_2769 at 3503.739 kb on + strand, within DvMF_2769 at 3503.741 kb on + strand at 3504.072 kb on - strand, within DvMF_2770 at 3504.180 kb on + strand at 3504.237 kb on - strand at 3504.335 kb on + strand, within DvMF_2771 at 3504.343 kb on - strand, within DvMF_2771 at 3504.343 kb on - strand, within DvMF_2771 at 3504.400 kb on - strand, within DvMF_2771 at 3504.400 kb on - strand, within DvMF_2771 at 3504.486 kb on - strand, within DvMF_2771 at 3504.600 kb on + strand, within DvMF_2771
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml remove 3,502,471 + -0.2 3,502,497 + +0.5 3,502,623 - -0.1 3,503,120 + -0.1 3,503,327 + DvMF_2769 0.30 -1.2 3,503,521 - DvMF_2769 0.58 -1.3 3,503,536 - DvMF_2769 0.60 -1.1 3,503,739 + DvMF_2769 0.90 -0.6 3,503,741 + -1.4 3,504,072 - DvMF_2770 0.37 +0.8 3,504,180 + -0.1 3,504,237 - -0.7 3,504,335 + DvMF_2771 0.18 -0.8 3,504,343 - DvMF_2771 0.19 -0.9 3,504,343 - DvMF_2771 0.19 -0.8 3,504,400 - DvMF_2771 0.29 -0.4 3,504,400 - DvMF_2771 0.29 -0.6 3,504,486 - DvMF_2771 0.43 -0.4 3,504,600 + DvMF_2771 0.61 -0.4
Or see this region's nucleotide sequence