Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2748

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2745 and DvMF_2746 are separated by 53 nucleotidesDvMF_2746 and DvMF_2747 are separated by 53 nucleotidesDvMF_2747 and DvMF_2748 are separated by 493 nucleotidesDvMF_2748 and DvMF_2749 are separated by 645 nucleotides DvMF_2745: DvMF_2745 - Flp/Fap pilin component (RefSeq), at 3,470,687 to 3,470,863 _2745 DvMF_2746: DvMF_2746 - Flp/Fap pilin component (RefSeq), at 3,470,917 to 3,471,093 _2746 DvMF_2747: DvMF_2747 - Flp/Fap pilin component (RefSeq), at 3,471,147 to 3,471,323 _2747 DvMF_2748: DvMF_2748 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,471,817 to 3,473,445 _2748 DvMF_2749: DvMF_2749 - hypothetical protein (RefSeq), at 3,474,091 to 3,474,687 _2749 Position (kb) 3471 3472 3473 3474Strain fitness (log2 ratio) -1 0 1at 3470.873 kb on + strandat 3470.893 kb on + strandat 3470.894 kb on - strandat 3470.971 kb on - strand, within DvMF_2746at 3471.310 kb on - strandat 3471.481 kb on + strandat 3471.700 kb on + strandat 3471.733 kb on + strandat 3471.734 kb on + strandat 3471.753 kb on - strandat 3471.878 kb on + strandat 3472.086 kb on - strand, within DvMF_2748at 3472.238 kb on + strand, within DvMF_2748at 3472.434 kb on + strand, within DvMF_2748at 3472.546 kb on - strand, within DvMF_2748at 3472.739 kb on + strand, within DvMF_2748at 3472.812 kb on - strand, within DvMF_2748at 3473.148 kb on + strand, within DvMF_2748at 3473.325 kb on - strandat 3473.846 kb on - strandat 3473.846 kb on - strandat 3473.864 kb on - strandat 3473.864 kb on - strandat 3473.877 kb on - strandat 3473.973 kb on + strandat 3473.997 kb on + strandat 3474.007 kb on + strandat 3474.025 kb on - strandat 3474.412 kb on - strand, within DvMF_2749

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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3,470,873 + -0.7
3,470,893 + -0.5
3,470,894 - -0.4
3,470,971 - DvMF_2746 0.31 -0.0
3,471,310 - -0.3
3,471,481 + -1.1
3,471,700 + -0.5
3,471,733 + -0.9
3,471,734 + -0.2
3,471,753 - -0.4
3,471,878 + -0.8
3,472,086 - DvMF_2748 0.17 -0.5
3,472,238 + DvMF_2748 0.26 -0.7
3,472,434 + DvMF_2748 0.38 -0.5
3,472,546 - DvMF_2748 0.45 -0.4
3,472,739 + DvMF_2748 0.57 -1.1
3,472,812 - DvMF_2748 0.61 -1.0
3,473,148 + DvMF_2748 0.82 -0.9
3,473,325 - -0.5
3,473,846 - -1.3
3,473,846 - -0.1
3,473,864 - -0.5
3,473,864 - -0.4
3,473,877 - -0.5
3,473,973 + -0.5
3,473,997 + -0.1
3,474,007 + -0.7
3,474,025 - -0.4
3,474,412 - DvMF_2749 0.54 -0.7

Or see this region's nucleotide sequence