Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2745 and DvMF_2746 are separated by 53 nucleotides DvMF_2746 and DvMF_2747 are separated by 53 nucleotides DvMF_2747 and DvMF_2748 are separated by 493 nucleotides DvMF_2748 and DvMF_2749 are separated by 645 nucleotides
DvMF_2745: DvMF_2745 - Flp/Fap pilin component (RefSeq), at 3,470,687 to 3,470,863
_2745
DvMF_2746: DvMF_2746 - Flp/Fap pilin component (RefSeq), at 3,470,917 to 3,471,093
_2746
DvMF_2747: DvMF_2747 - Flp/Fap pilin component (RefSeq), at 3,471,147 to 3,471,323
_2747
DvMF_2748: DvMF_2748 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,471,817 to 3,473,445
_2748
DvMF_2749: DvMF_2749 - hypothetical protein (RefSeq), at 3,474,091 to 3,474,687
_2749
Position (kb)
3471
3472
3473
3474 Strain fitness (log2 ratio)
-1
0
1 at 3470.873 kb on + strand at 3470.893 kb on + strand at 3470.894 kb on - strand at 3470.971 kb on - strand, within DvMF_2746 at 3471.310 kb on - strand at 3471.481 kb on + strand at 3471.700 kb on + strand at 3471.733 kb on + strand at 3471.734 kb on + strand at 3471.753 kb on - strand at 3471.878 kb on + strand at 3472.086 kb on - strand, within DvMF_2748 at 3472.238 kb on + strand, within DvMF_2748 at 3472.434 kb on + strand, within DvMF_2748 at 3472.546 kb on - strand, within DvMF_2748 at 3472.739 kb on + strand, within DvMF_2748 at 3472.812 kb on - strand, within DvMF_2748 at 3473.148 kb on + strand, within DvMF_2748 at 3473.325 kb on - strand at 3473.846 kb on - strand at 3473.846 kb on - strand at 3473.864 kb on - strand at 3473.864 kb on - strand at 3473.877 kb on - strand at 3473.973 kb on + strand at 3473.997 kb on + strand at 3474.007 kb on + strand at 3474.025 kb on - strand at 3474.412 kb on - strand, within DvMF_2749
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml remove 3,470,873 + -0.7 3,470,893 + -0.5 3,470,894 - -0.4 3,470,971 - DvMF_2746 0.31 -0.0 3,471,310 - -0.3 3,471,481 + -1.1 3,471,700 + -0.5 3,471,733 + -0.9 3,471,734 + -0.2 3,471,753 - -0.4 3,471,878 + -0.8 3,472,086 - DvMF_2748 0.17 -0.5 3,472,238 + DvMF_2748 0.26 -0.7 3,472,434 + DvMF_2748 0.38 -0.5 3,472,546 - DvMF_2748 0.45 -0.4 3,472,739 + DvMF_2748 0.57 -1.1 3,472,812 - DvMF_2748 0.61 -1.0 3,473,148 + DvMF_2748 0.82 -0.9 3,473,325 - -0.5 3,473,846 - -1.3 3,473,846 - -0.1 3,473,864 - -0.5 3,473,864 - -0.4 3,473,877 - -0.5 3,473,973 + -0.5 3,473,997 + -0.1 3,474,007 + -0.7 3,474,025 - -0.4 3,474,412 - DvMF_2749 0.54 -0.7
Or see this region's nucleotide sequence