Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2699

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2698 and DvMF_2699 overlap by 4 nucleotidesDvMF_2699 and DvMF_2700 overlap by 1 nucleotides DvMF_2698: DvMF_2698 - methyltransferase FkbM family (RefSeq), at 3,413,532 to 3,415,271 _2698 DvMF_2699: DvMF_2699 - glycosyl transferase family 11 (RefSeq), at 3,415,268 to 3,416,110 _2699 DvMF_2700: DvMF_2700 - glycosyl transferase family 2 (RefSeq), at 3,416,110 to 3,417,864 _2700 Position (kb) 3415 3416 3417Strain fitness (log2 ratio) -2 -1 0 1at 3414.303 kb on + strand, within DvMF_2698at 3414.403 kb on - strand, within DvMF_2698at 3414.456 kb on - strand, within DvMF_2698at 3414.798 kb on + strand, within DvMF_2698at 3415.160 kb on + strandat 3415.232 kb on + strandat 3415.744 kb on + strand, within DvMF_2699at 3416.348 kb on + strand, within DvMF_2700

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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3,414,303 + DvMF_2698 0.44 -2.3
3,414,403 - DvMF_2698 0.50 -1.6
3,414,456 - DvMF_2698 0.53 +0.4
3,414,798 + DvMF_2698 0.73 -1.1
3,415,160 + -0.1
3,415,232 + -0.1
3,415,744 + DvMF_2699 0.56 -1.2
3,416,348 + DvMF_2700 0.14 -2.1

Or see this region's nucleotide sequence