Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2694

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2693 and DvMF_R0072 are separated by 442 nucleotidesDvMF_R0072 and DvMF_2694 are separated by 223 nucleotidesDvMF_2694 and DvMF_2695 overlap by 4 nucleotides DvMF_2693: DvMF_2693 - histidine kinase (RefSeq), at 3,406,530 to 3,408,245 _2693 DvMF_R0072: DvMF_R0072 - tRNA-Ser (RefSeq), at 3,408,688 to 3,408,779 _R0072 DvMF_2694: DvMF_2694 - GDP-mannose 4,6-dehydratase (RefSeq), at 3,409,003 to 3,410,208 _2694 DvMF_2695: DvMF_2695 - NAD-dependent epimerase/dehydratase (RefSeq), at 3,410,205 to 3,411,170 _2695 Position (kb) 3409 3410 3411Strain fitness (log2 ratio) -3 -2 -1 0 1at 3408.335 kb on + strandat 3408.627 kb on - strandat 3408.627 kb on - strandat 3408.627 kb on - strandat 3408.976 kb on + strandat 3409.148 kb on - strand, within DvMF_2694at 3409.261 kb on + strand, within DvMF_2694at 3409.502 kb on + strand, within DvMF_2694at 3409.651 kb on - strand, within DvMF_2694at 3410.724 kb on - strand, within DvMF_2695at 3411.124 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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3,408,335 + -0.4
3,408,627 - +0.2
3,408,627 - +0.2
3,408,627 - +0.2
3,408,976 + -0.2
3,409,148 - DvMF_2694 0.12 -1.1
3,409,261 + DvMF_2694 0.21 -3.1
3,409,502 + DvMF_2694 0.41 -2.4
3,409,651 - DvMF_2694 0.54 -2.6
3,410,724 - DvMF_2695 0.54 -2.4
3,411,124 - -2.5

Or see this region's nucleotide sequence