Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2691

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2689 and DvMF_2690 are separated by 12 nucleotidesDvMF_2690 and DvMF_2691 are separated by 165 nucleotidesDvMF_2691 and DvMF_2692 overlap by 4 nucleotidesDvMF_2692 and DvMF_2693 are separated by 195 nucleotides DvMF_2689: DvMF_2689 - molybdopterin oxidoreductase (RefSeq), at 3,401,353 to 3,403,428 _2689 DvMF_2690: DvMF_2690 - hypothetical protein (RefSeq), at 3,403,441 to 3,404,076 _2690 DvMF_2691: DvMF_2691 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase (RefSeq), at 3,404,242 to 3,405,747 _2691 DvMF_2692: DvMF_2692 - dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq), at 3,405,744 to 3,406,334 _2692 DvMF_2693: DvMF_2693 - histidine kinase (RefSeq), at 3,406,530 to 3,408,245 _2693 Position (kb) 3404 3405 3406Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3403.857 kb on + strand, within DvMF_2690at 3403.865 kb on - strand, within DvMF_2690at 3404.086 kb on - strandat 3404.522 kb on - strand, within DvMF_2691at 3404.671 kb on + strand, within DvMF_2691at 3404.788 kb on - strand, within DvMF_2691at 3404.931 kb on + strand, within DvMF_2691at 3405.113 kb on + strand, within DvMF_2691at 3405.243 kb on + strand, within DvMF_2691at 3405.313 kb on - strand, within DvMF_2691at 3405.481 kb on - strand, within DvMF_2691at 3405.502 kb on - strand, within DvMF_2691at 3405.867 kb on + strand, within DvMF_2692at 3405.878 kb on + strand, within DvMF_2692at 3405.878 kb on + strand, within DvMF_2692at 3405.878 kb on + strand, within DvMF_2692at 3405.975 kb on - strand, within DvMF_2692at 3405.980 kb on + strand, within DvMF_2692at 3405.988 kb on - strand, within DvMF_2692at 3406.028 kb on + strand, within DvMF_2692at 3406.108 kb on + strand, within DvMF_2692at 3406.125 kb on - strand, within DvMF_2692at 3406.173 kb on - strand, within DvMF_2692at 3406.178 kb on - strand, within DvMF_2692at 3406.235 kb on + strand, within DvMF_2692at 3406.353 kb on - strandat 3406.558 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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3,403,857 + DvMF_2690 0.65 -1.7
3,403,865 - DvMF_2690 0.67 -0.1
3,404,086 - -0.9
3,404,522 - DvMF_2691 0.19 -2.4
3,404,671 + DvMF_2691 0.28 -2.8
3,404,788 - DvMF_2691 0.36 -3.1
3,404,931 + DvMF_2691 0.46 -1.8
3,405,113 + DvMF_2691 0.58 -4.1
3,405,243 + DvMF_2691 0.66 -2.4
3,405,313 - DvMF_2691 0.71 -0.9
3,405,481 - DvMF_2691 0.82 -3.6
3,405,502 - DvMF_2691 0.84 -1.4
3,405,867 + DvMF_2692 0.21 -0.4
3,405,878 + DvMF_2692 0.23 -1.0
3,405,878 + DvMF_2692 0.23 +0.8
3,405,878 + DvMF_2692 0.23 -0.8
3,405,975 - DvMF_2692 0.39 -0.7
3,405,980 + DvMF_2692 0.40 -1.0
3,405,988 - DvMF_2692 0.41 -0.5
3,406,028 + DvMF_2692 0.48 +0.6
3,406,108 + DvMF_2692 0.62 -0.7
3,406,125 - DvMF_2692 0.64 -0.8
3,406,173 - DvMF_2692 0.73 -0.5
3,406,178 - DvMF_2692 0.73 -0.2
3,406,235 + DvMF_2692 0.83 -1.0
3,406,353 - -0.6
3,406,558 + +0.5

Or see this region's nucleotide sequence