Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2675

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2674 and DvMF_2675 are separated by 1 nucleotidesDvMF_2675 and DvMF_2676 are separated by 385 nucleotides DvMF_2674: DvMF_2674 - HflK protein (RefSeq), at 3,376,931 to 3,378,097 _2674 DvMF_2675: DvMF_2675 - HflC protein (RefSeq), at 3,378,099 to 3,378,953 _2675 DvMF_2676: DvMF_2676 - putative phage repressor (RefSeq), at 3,379,339 to 3,380,034 _2676 Position (kb) 3378 3379Strain fitness (log2 ratio) -3 -2 -1 0 1at 3377.281 kb on - strand, within DvMF_2674at 3377.353 kb on + strand, within DvMF_2674at 3377.421 kb on - strand, within DvMF_2674at 3377.623 kb on + strand, within DvMF_2674at 3377.651 kb on - strand, within DvMF_2674at 3377.841 kb on - strand, within DvMF_2674at 3377.841 kb on - strand, within DvMF_2674at 3377.914 kb on - strand, within DvMF_2674at 3378.103 kb on - strandat 3378.224 kb on - strand, within DvMF_2675at 3378.288 kb on - strand, within DvMF_2675at 3378.974 kb on + strandat 3379.117 kb on + strandat 3379.414 kb on + strand, within DvMF_2676at 3379.553 kb on + strand, within DvMF_2676at 3379.558 kb on + strand, within DvMF_2676

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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3,377,281 - DvMF_2674 0.30 -1.5
3,377,353 + DvMF_2674 0.36 -0.8
3,377,421 - DvMF_2674 0.42 -2.6
3,377,623 + DvMF_2674 0.59 -1.7
3,377,651 - DvMF_2674 0.62 -1.6
3,377,841 - DvMF_2674 0.78 -2.1
3,377,841 - DvMF_2674 0.78 -2.0
3,377,914 - DvMF_2674 0.84 -2.6
3,378,103 - -2.3
3,378,224 - DvMF_2675 0.15 -2.8
3,378,288 - DvMF_2675 0.22 -3.2
3,378,974 + -0.4
3,379,117 + -0.0
3,379,414 + DvMF_2676 0.11 +0.4
3,379,553 + DvMF_2676 0.31 -0.2
3,379,558 + DvMF_2676 0.31 -0.1

Or see this region's nucleotide sequence