Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2673

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2671 and DvMF_2672 overlap by 11 nucleotidesDvMF_2672 and DvMF_2673 are separated by 73 nucleotidesDvMF_2673 and DvMF_2674 are separated by 83 nucleotides DvMF_2671: DvMF_2671 - Aldehyde ferredoxin oxidoreductase (RefSeq), at 3,373,042 to 3,374,847 _2671 DvMF_2672: DvMF_2672 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 3,374,837 to 3,375,379 _2672 DvMF_2673: DvMF_2673 - Phosphomannomutase (RefSeq), at 3,375,453 to 3,376,847 _2673 DvMF_2674: DvMF_2674 - HflK protein (RefSeq), at 3,376,931 to 3,378,097 _2674 Position (kb) 3375 3376 3377Strain fitness (log2 ratio) -3 -2 -1 0 1at 3374.468 kb on - strand, within DvMF_2671at 3374.481 kb on + strand, within DvMF_2671at 3374.637 kb on - strand, within DvMF_2671at 3374.734 kb on + strandat 3375.228 kb on + strand, within DvMF_2672at 3375.450 kb on + strandat 3375.465 kb on + strandat 3375.497 kb on - strandat 3375.533 kb on - strandat 3375.610 kb on - strand, within DvMF_2673at 3375.629 kb on - strand, within DvMF_2673at 3376.237 kb on + strand, within DvMF_2673at 3377.281 kb on - strand, within DvMF_2674at 3377.353 kb on + strand, within DvMF_2674at 3377.421 kb on - strand, within DvMF_2674at 3377.623 kb on + strand, within DvMF_2674at 3377.651 kb on - strand, within DvMF_2674at 3377.841 kb on - strand, within DvMF_2674at 3377.841 kb on - strand, within DvMF_2674

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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3,374,468 - DvMF_2671 0.79 +0.2
3,374,481 + DvMF_2671 0.80 -0.8
3,374,637 - DvMF_2671 0.88 -0.6
3,374,734 + -0.1
3,375,228 + DvMF_2672 0.72 +0.2
3,375,450 + -0.8
3,375,465 + -0.4
3,375,497 - -0.4
3,375,533 - -3.3
3,375,610 - DvMF_2673 0.11 -2.7
3,375,629 - DvMF_2673 0.13 -1.7
3,376,237 + DvMF_2673 0.56 -1.9
3,377,281 - DvMF_2674 0.30 -1.5
3,377,353 + DvMF_2674 0.36 -0.8
3,377,421 - DvMF_2674 0.42 -2.6
3,377,623 + DvMF_2674 0.59 -1.7
3,377,651 - DvMF_2674 0.62 -1.6
3,377,841 - DvMF_2674 0.78 -2.1
3,377,841 - DvMF_2674 0.78 -2.0

Or see this region's nucleotide sequence