Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2671 and DvMF_2672 overlap by 11 nucleotides DvMF_2672 and DvMF_2673 are separated by 73 nucleotides DvMF_2673 and DvMF_2674 are separated by 83 nucleotides
DvMF_2671: DvMF_2671 - Aldehyde ferredoxin oxidoreductase (RefSeq), at 3,373,042 to 3,374,847
_2671
DvMF_2672: DvMF_2672 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 3,374,837 to 3,375,379
_2672
DvMF_2673: DvMF_2673 - Phosphomannomutase (RefSeq), at 3,375,453 to 3,376,847
_2673
DvMF_2674: DvMF_2674 - HflK protein (RefSeq), at 3,376,931 to 3,378,097
_2674
Position (kb)
3375
3376
3377 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3374.468 kb on - strand, within DvMF_2671 at 3374.481 kb on + strand, within DvMF_2671 at 3374.637 kb on - strand, within DvMF_2671 at 3374.734 kb on + strand at 3375.228 kb on + strand, within DvMF_2672 at 3375.450 kb on + strand at 3375.465 kb on + strand at 3375.497 kb on - strand at 3375.533 kb on - strand at 3375.610 kb on - strand, within DvMF_2673 at 3375.629 kb on - strand, within DvMF_2673 at 3376.237 kb on + strand, within DvMF_2673 at 3377.281 kb on - strand, within DvMF_2674 at 3377.353 kb on + strand, within DvMF_2674 at 3377.421 kb on - strand, within DvMF_2674 at 3377.623 kb on + strand, within DvMF_2674 at 3377.651 kb on - strand, within DvMF_2674 at 3377.841 kb on - strand, within DvMF_2674 at 3377.841 kb on - strand, within DvMF_2674
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml remove 3,374,468 - DvMF_2671 0.79 +0.2 3,374,481 + DvMF_2671 0.80 -0.8 3,374,637 - DvMF_2671 0.88 -0.6 3,374,734 + -0.1 3,375,228 + DvMF_2672 0.72 +0.2 3,375,450 + -0.8 3,375,465 + -0.4 3,375,497 - -0.4 3,375,533 - -3.3 3,375,610 - DvMF_2673 0.11 -2.7 3,375,629 - DvMF_2673 0.13 -1.7 3,376,237 + DvMF_2673 0.56 -1.9 3,377,281 - DvMF_2674 0.30 -1.5 3,377,353 + DvMF_2674 0.36 -0.8 3,377,421 - DvMF_2674 0.42 -2.6 3,377,623 + DvMF_2674 0.59 -1.7 3,377,651 - DvMF_2674 0.62 -1.6 3,377,841 - DvMF_2674 0.78 -2.1 3,377,841 - DvMF_2674 0.78 -2.0
Or see this region's nucleotide sequence