Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2645

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2644 and DvMF_2645 are separated by 110 nucleotidesDvMF_2645 and DvMF_2646 are separated by 105 nucleotides DvMF_2644: DvMF_2644 - putative two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,345,182 to 3,347,155 _2644 DvMF_2645: DvMF_2645 - peptidase U32 (RefSeq), at 3,347,266 to 3,348,558 _2645 DvMF_2646: DvMF_2646 - PHP domain protein (RefSeq), at 3,348,664 to 3,349,548 _2646 Position (kb) 3347 3348 3349Strain fitness (log2 ratio) -2 -1 0 1at 3346.283 kb on - strand, within DvMF_2644at 3346.382 kb on - strand, within DvMF_2644at 3346.466 kb on - strand, within DvMF_2644at 3346.748 kb on - strand, within DvMF_2644at 3346.838 kb on - strand, within DvMF_2644at 3346.854 kb on + strand, within DvMF_2644at 3346.902 kb on - strand, within DvMF_2644at 3347.081 kb on + strandat 3347.311 kb on + strandat 3347.317 kb on - strandat 3347.432 kb on - strand, within DvMF_2645at 3347.516 kb on - strand, within DvMF_2645at 3347.924 kb on - strand, within DvMF_2645at 3348.026 kb on + strand, within DvMF_2645at 3348.098 kb on + strand, within DvMF_2645at 3348.306 kb on - strand, within DvMF_2645at 3348.573 kb on + strandat 3348.581 kb on - strandat 3348.696 kb on + strandat 3348.696 kb on + strandat 3348.704 kb on - strandat 3348.838 kb on - strand, within DvMF_2646at 3348.919 kb on + strand, within DvMF_2646at 3348.965 kb on + strand, within DvMF_2646at 3349.405 kb on + strand, within DvMF_2646

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
remove
3,346,283 - DvMF_2644 0.56 -0.3
3,346,382 - DvMF_2644 0.61 -0.2
3,346,466 - DvMF_2644 0.65 -0.4
3,346,748 - DvMF_2644 0.79 -0.4
3,346,838 - DvMF_2644 0.84 -0.5
3,346,854 + DvMF_2644 0.85 -0.1
3,346,902 - DvMF_2644 0.87 -0.4
3,347,081 + -0.1
3,347,311 + -1.1
3,347,317 - -1.8
3,347,432 - DvMF_2645 0.13 -1.3
3,347,516 - DvMF_2645 0.19 -0.6
3,347,924 - DvMF_2645 0.51 -1.7
3,348,026 + DvMF_2645 0.59 -1.9
3,348,098 + DvMF_2645 0.64 +0.5
3,348,306 - DvMF_2645 0.80 -1.6
3,348,573 + -0.5
3,348,581 - +0.4
3,348,696 + -0.7
3,348,696 + -1.2
3,348,704 - -0.8
3,348,838 - DvMF_2646 0.20 -0.6
3,348,919 + DvMF_2646 0.29 -1.4
3,348,965 + DvMF_2646 0.34 -0.5
3,349,405 + DvMF_2646 0.84 -0.7

Or see this region's nucleotide sequence