Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2572

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2570 and DvMF_2571 are separated by 2 nucleotidesDvMF_2571 and DvMF_2572 are separated by 351 nucleotidesDvMF_2572 and DvMF_2573 overlap by 1 nucleotides DvMF_2570: DvMF_2570 - hypothetical protein (RefSeq), at 3,248,682 to 3,250,268 _2570 DvMF_2571: DvMF_2571 - hypothetical protein (RefSeq), at 3,250,271 to 3,250,729 _2571 DvMF_2572: DvMF_2572 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,251,081 to 3,252,637 _2572 DvMF_2573: DvMF_2573 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,252,637 to 3,254,838 _2573 Position (kb) 3251 3252 3253Strain fitness (log2 ratio) -3 -2 -1 0 1at 3250.242 kb on + strandat 3250.250 kb on - strandat 3250.309 kb on + strandat 3250.317 kb on - strand, within DvMF_2571at 3250.317 kb on - strand, within DvMF_2571at 3250.324 kb on + strand, within DvMF_2571at 3250.324 kb on + strand, within DvMF_2571at 3250.324 kb on + strand, within DvMF_2571at 3250.332 kb on - strand, within DvMF_2571at 3250.338 kb on + strand, within DvMF_2571at 3250.525 kb on + strand, within DvMF_2571at 3250.612 kb on - strand, within DvMF_2571at 3250.760 kb on + strandat 3251.056 kb on + strandat 3251.116 kb on + strandat 3251.212 kb on + strandat 3251.224 kb on - strandat 3251.311 kb on - strand, within DvMF_2572at 3251.369 kb on - strand, within DvMF_2572at 3252.011 kb on - strand, within DvMF_2572at 3252.190 kb on + strand, within DvMF_2572at 3252.597 kb on + strandat 3252.637 kb on - strandat 3252.646 kb on - strandat 3252.845 kb on - strandat 3252.855 kb on - strandat 3253.027 kb on - strand, within DvMF_2573at 3253.200 kb on + strand, within DvMF_2573at 3253.247 kb on - strand, within DvMF_2573at 3253.262 kb on - strand, within DvMF_2573at 3253.517 kb on + strand, within DvMF_2573

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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3,250,242 + -0.8
3,250,250 - +0.1
3,250,309 + -0.2
3,250,317 - DvMF_2571 0.10 -1.2
3,250,317 - DvMF_2571 0.10 -0.2
3,250,324 + DvMF_2571 0.12 -0.6
3,250,324 + DvMF_2571 0.12 -0.7
3,250,324 + DvMF_2571 0.12 -0.9
3,250,332 - DvMF_2571 0.13 -0.1
3,250,338 + DvMF_2571 0.15 -0.8
3,250,525 + DvMF_2571 0.55 +0.2
3,250,612 - DvMF_2571 0.74 -0.4
3,250,760 + -0.4
3,251,056 + -0.6
3,251,116 + -0.8
3,251,212 + -0.5
3,251,224 - -0.5
3,251,311 - DvMF_2572 0.15 -2.8
3,251,369 - DvMF_2572 0.18 -0.7
3,252,011 - DvMF_2572 0.60 -0.7
3,252,190 + DvMF_2572 0.71 -1.2
3,252,597 + +0.1
3,252,637 - -1.1
3,252,646 - -0.2
3,252,845 - -1.0
3,252,855 - -0.1
3,253,027 - DvMF_2573 0.18 -0.4
3,253,200 + DvMF_2573 0.26 -1.5
3,253,247 - DvMF_2573 0.28 -0.2
3,253,262 - DvMF_2573 0.28 -0.5
3,253,517 + DvMF_2573 0.40 -0.4

Or see this region's nucleotide sequence