Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2525 and DvMF_2526 are separated by 12 nucleotides DvMF_2526 and DvMF_2527 overlap by 25 nucleotides DvMF_2527 and DvMF_2528 are separated by 166 nucleotides
DvMF_2525: DvMF_2525 - flagellar hook-associated protein 3 (RefSeq), at 3,184,345 to 3,185,868
_2525
DvMF_2526: DvMF_2526 - carbon storage regulator, CsrA (RefSeq), at 3,185,881 to 3,186,120
_2526
DvMF_2527: DvMF_2527 - flagellar assembly protein FliW (RefSeq), at 3,186,096 to 3,186,647
_2527
DvMF_2528: DvMF_2528 - transcriptional regulator, NifA subfamily, Fis Family (RefSeq), at 3,186,814 to 3,188,553
_2528
Position (kb)
3185
3186
3187 Strain fitness (log2 ratio)
-1
0
1 at 3185.111 kb on - strand, within DvMF_2525 at 3185.483 kb on + strand, within DvMF_2525 at 3185.500 kb on + strand, within DvMF_2525 at 3185.747 kb on + strand at 3185.967 kb on + strand, within DvMF_2526 at 3186.155 kb on + strand, within DvMF_2527 at 3186.327 kb on - strand, within DvMF_2527 at 3186.818 kb on - strand at 3186.848 kb on + strand at 3186.922 kb on + strand at 3186.922 kb on + strand at 3186.924 kb on + strand at 3186.930 kb on - strand at 3186.984 kb on + strand at 3186.984 kb on + strand at 3186.986 kb on + strand at 3186.992 kb on - strand, within DvMF_2528 at 3186.994 kb on - strand, within DvMF_2528 at 3186.994 kb on - strand, within DvMF_2528 at 3187.085 kb on + strand, within DvMF_2528
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml remove 3,185,111 - DvMF_2525 0.50 +0.8 3,185,483 + DvMF_2525 0.75 +1.6 3,185,500 + DvMF_2525 0.76 +1.5 3,185,747 + +1.4 3,185,967 + DvMF_2526 0.36 -0.4 3,186,155 + DvMF_2527 0.11 +0.7 3,186,327 - DvMF_2527 0.42 +0.4 3,186,818 - -0.4 3,186,848 + -0.4 3,186,922 + -0.6 3,186,922 + -0.3 3,186,924 + +0.5 3,186,930 - -1.1 3,186,984 + -0.5 3,186,984 + +0.5 3,186,986 + -1.0 3,186,992 - DvMF_2528 0.10 -0.9 3,186,994 - DvMF_2528 0.10 -1.0 3,186,994 - DvMF_2528 0.10 -0.5 3,187,085 + DvMF_2528 0.16 -0.4
Or see this region's nucleotide sequence