Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2424 and DvMF_2425 are separated by 83 nucleotides DvMF_2425 and DvMF_2426 are separated by 99 nucleotides DvMF_2426 and DvMF_2427 overlap by 4 nucleotides
DvMF_2424: DvMF_2424 - hypothetical protein (RefSeq), at 3,060,941 to 3,061,774
_2424
DvMF_2425: DvMF_2425 - hypothetical protein (RefSeq), at 3,061,858 to 3,062,364
_2425
DvMF_2426: DvMF_2426 - type III secretion outer membrane pore, YscC/HrcC family (RefSeq), at 3,062,464 to 3,064,464
_2426
DvMF_2427: DvMF_2427 - type III secretion apparatus protein, YscD/HrpQ family (RefSeq), at 3,064,461 to 3,066,029
_2427
Position (kb)
3062
3063
3064
3065 Strain fitness (log2 ratio)
-1
0
1 at 3061.586 kb on - strand, within DvMF_2424 at 3061.736 kb on - strand at 3061.962 kb on + strand, within DvMF_2425 at 3062.135 kb on + strand, within DvMF_2425 at 3062.476 kb on + strand at 3062.491 kb on - strand at 3062.666 kb on + strand, within DvMF_2426 at 3062.666 kb on + strand, within DvMF_2426 at 3062.969 kb on - strand, within DvMF_2426 at 3063.058 kb on + strand, within DvMF_2426 at 3063.291 kb on + strand, within DvMF_2426 at 3063.306 kb on + strand, within DvMF_2426 at 3063.338 kb on - strand, within DvMF_2426 at 3063.382 kb on - strand, within DvMF_2426 at 3063.572 kb on + strand, within DvMF_2426 at 3063.590 kb on + strand, within DvMF_2426 at 3063.598 kb on - strand, within DvMF_2426 at 3063.598 kb on - strand, within DvMF_2426 at 3063.598 kb on - strand, within DvMF_2426 at 3063.598 kb on - strand, within DvMF_2426 at 3063.689 kb on + strand, within DvMF_2426 at 3063.689 kb on + strand, within DvMF_2426 at 3063.689 kb on + strand, within DvMF_2426 at 3063.701 kb on + strand, within DvMF_2426 at 3063.759 kb on - strand, within DvMF_2426 at 3063.800 kb on - strand, within DvMF_2426 at 3063.888 kb on - strand, within DvMF_2426 at 3064.066 kb on - strand, within DvMF_2426 at 3064.128 kb on - strand, within DvMF_2426 at 3064.138 kb on - strand, within DvMF_2426 at 3064.585 kb on + strand at 3064.881 kb on + strand, within DvMF_2427 at 3065.071 kb on - strand, within DvMF_2427 at 3065.175 kb on - strand, within DvMF_2427 at 3065.264 kb on + strand, within DvMF_2427
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml remove 3,061,586 - DvMF_2424 0.77 -0.2 3,061,736 - +0.6 3,061,962 + DvMF_2425 0.21 +0.2 3,062,135 + DvMF_2425 0.55 +0.1 3,062,476 + +0.0 3,062,491 - +0.6 3,062,666 + DvMF_2426 0.10 -0.5 3,062,666 + DvMF_2426 0.10 -0.3 3,062,969 - DvMF_2426 0.25 -0.2 3,063,058 + DvMF_2426 0.30 -0.2 3,063,291 + DvMF_2426 0.41 -0.1 3,063,306 + DvMF_2426 0.42 -0.1 3,063,338 - DvMF_2426 0.44 -0.8 3,063,382 - DvMF_2426 0.46 +0.3 3,063,572 + DvMF_2426 0.55 -0.6 3,063,590 + DvMF_2426 0.56 -0.0 3,063,598 - DvMF_2426 0.57 -0.2 3,063,598 - DvMF_2426 0.57 -1.3 3,063,598 - DvMF_2426 0.57 -0.6 3,063,598 - DvMF_2426 0.57 -0.5 3,063,689 + DvMF_2426 0.61 -0.2 3,063,689 + DvMF_2426 0.61 -0.5 3,063,689 + DvMF_2426 0.61 -0.4 3,063,701 + DvMF_2426 0.62 -0.3 3,063,759 - DvMF_2426 0.65 -0.2 3,063,800 - DvMF_2426 0.67 -0.4 3,063,888 - DvMF_2426 0.71 -0.1 3,064,066 - DvMF_2426 0.80 +0.1 3,064,128 - DvMF_2426 0.83 -0.6 3,064,138 - DvMF_2426 0.84 -0.8 3,064,585 + -0.5 3,064,881 + DvMF_2427 0.27 -0.5 3,065,071 - DvMF_2427 0.39 +0.0 3,065,175 - DvMF_2427 0.46 -0.4 3,065,264 + DvMF_2427 0.51 -0.2
Or see this region's nucleotide sequence