Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2426

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2424 and DvMF_2425 are separated by 83 nucleotidesDvMF_2425 and DvMF_2426 are separated by 99 nucleotidesDvMF_2426 and DvMF_2427 overlap by 4 nucleotides DvMF_2424: DvMF_2424 - hypothetical protein (RefSeq), at 3,060,941 to 3,061,774 _2424 DvMF_2425: DvMF_2425 - hypothetical protein (RefSeq), at 3,061,858 to 3,062,364 _2425 DvMF_2426: DvMF_2426 - type III secretion outer membrane pore, YscC/HrcC family (RefSeq), at 3,062,464 to 3,064,464 _2426 DvMF_2427: DvMF_2427 - type III secretion apparatus protein, YscD/HrpQ family (RefSeq), at 3,064,461 to 3,066,029 _2427 Position (kb) 3062 3063 3064 3065Strain fitness (log2 ratio) -1 0 1at 3061.586 kb on - strand, within DvMF_2424at 3061.736 kb on - strandat 3061.962 kb on + strand, within DvMF_2425at 3062.135 kb on + strand, within DvMF_2425at 3062.476 kb on + strandat 3062.491 kb on - strandat 3062.666 kb on + strand, within DvMF_2426at 3062.666 kb on + strand, within DvMF_2426at 3062.969 kb on - strand, within DvMF_2426at 3063.058 kb on + strand, within DvMF_2426at 3063.291 kb on + strand, within DvMF_2426at 3063.306 kb on + strand, within DvMF_2426at 3063.338 kb on - strand, within DvMF_2426at 3063.382 kb on - strand, within DvMF_2426at 3063.572 kb on + strand, within DvMF_2426at 3063.590 kb on + strand, within DvMF_2426at 3063.598 kb on - strand, within DvMF_2426at 3063.598 kb on - strand, within DvMF_2426at 3063.598 kb on - strand, within DvMF_2426at 3063.598 kb on - strand, within DvMF_2426at 3063.689 kb on + strand, within DvMF_2426at 3063.689 kb on + strand, within DvMF_2426at 3063.689 kb on + strand, within DvMF_2426at 3063.701 kb on + strand, within DvMF_2426at 3063.759 kb on - strand, within DvMF_2426at 3063.800 kb on - strand, within DvMF_2426at 3063.888 kb on - strand, within DvMF_2426at 3064.066 kb on - strand, within DvMF_2426at 3064.128 kb on - strand, within DvMF_2426at 3064.138 kb on - strand, within DvMF_2426at 3064.585 kb on + strandat 3064.881 kb on + strand, within DvMF_2427at 3065.071 kb on - strand, within DvMF_2427at 3065.175 kb on - strand, within DvMF_2427at 3065.264 kb on + strand, within DvMF_2427

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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3,061,586 - DvMF_2424 0.77 -0.2
3,061,736 - +0.6
3,061,962 + DvMF_2425 0.21 +0.2
3,062,135 + DvMF_2425 0.55 +0.1
3,062,476 + +0.0
3,062,491 - +0.6
3,062,666 + DvMF_2426 0.10 -0.5
3,062,666 + DvMF_2426 0.10 -0.3
3,062,969 - DvMF_2426 0.25 -0.2
3,063,058 + DvMF_2426 0.30 -0.2
3,063,291 + DvMF_2426 0.41 -0.1
3,063,306 + DvMF_2426 0.42 -0.1
3,063,338 - DvMF_2426 0.44 -0.8
3,063,382 - DvMF_2426 0.46 +0.3
3,063,572 + DvMF_2426 0.55 -0.6
3,063,590 + DvMF_2426 0.56 -0.0
3,063,598 - DvMF_2426 0.57 -0.2
3,063,598 - DvMF_2426 0.57 -1.3
3,063,598 - DvMF_2426 0.57 -0.6
3,063,598 - DvMF_2426 0.57 -0.5
3,063,689 + DvMF_2426 0.61 -0.2
3,063,689 + DvMF_2426 0.61 -0.5
3,063,689 + DvMF_2426 0.61 -0.4
3,063,701 + DvMF_2426 0.62 -0.3
3,063,759 - DvMF_2426 0.65 -0.2
3,063,800 - DvMF_2426 0.67 -0.4
3,063,888 - DvMF_2426 0.71 -0.1
3,064,066 - DvMF_2426 0.80 +0.1
3,064,128 - DvMF_2426 0.83 -0.6
3,064,138 - DvMF_2426 0.84 -0.8
3,064,585 + -0.5
3,064,881 + DvMF_2427 0.27 -0.5
3,065,071 - DvMF_2427 0.39 +0.0
3,065,175 - DvMF_2427 0.46 -0.4
3,065,264 + DvMF_2427 0.51 -0.2

Or see this region's nucleotide sequence