Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2425

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2423 and DvMF_2424 are separated by 10 nucleotidesDvMF_2424 and DvMF_2425 are separated by 83 nucleotidesDvMF_2425 and DvMF_2426 are separated by 99 nucleotides DvMF_2423: DvMF_2423 - hypothetical protein (RefSeq), at 3,059,914 to 3,060,930 _2423 DvMF_2424: DvMF_2424 - hypothetical protein (RefSeq), at 3,060,941 to 3,061,774 _2424 DvMF_2425: DvMF_2425 - hypothetical protein (RefSeq), at 3,061,858 to 3,062,364 _2425 DvMF_2426: DvMF_2426 - type III secretion outer membrane pore, YscC/HrcC family (RefSeq), at 3,062,464 to 3,064,464 _2426 Position (kb) 3061 3062 3063Strain fitness (log2 ratio) -1 0 1at 3061.011 kb on - strandat 3061.125 kb on + strand, within DvMF_2424at 3061.262 kb on + strand, within DvMF_2424at 3061.269 kb on - strand, within DvMF_2424at 3061.382 kb on + strand, within DvMF_2424at 3061.383 kb on - strand, within DvMF_2424at 3061.586 kb on - strand, within DvMF_2424at 3061.736 kb on - strandat 3061.962 kb on + strand, within DvMF_2425at 3062.135 kb on + strand, within DvMF_2425at 3062.476 kb on + strandat 3062.491 kb on - strandat 3062.666 kb on + strand, within DvMF_2426at 3062.666 kb on + strand, within DvMF_2426at 3062.969 kb on - strand, within DvMF_2426at 3063.058 kb on + strand, within DvMF_2426at 3063.291 kb on + strand, within DvMF_2426at 3063.306 kb on + strand, within DvMF_2426at 3063.338 kb on - strand, within DvMF_2426

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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3,061,011 - -0.5
3,061,125 + DvMF_2424 0.22 -0.1
3,061,262 + DvMF_2424 0.38 -0.1
3,061,269 - DvMF_2424 0.39 -0.9
3,061,382 + DvMF_2424 0.53 -0.3
3,061,383 - DvMF_2424 0.53 -0.9
3,061,586 - DvMF_2424 0.77 -0.2
3,061,736 - +0.6
3,061,962 + DvMF_2425 0.21 +0.2
3,062,135 + DvMF_2425 0.55 +0.1
3,062,476 + +0.0
3,062,491 - +0.6
3,062,666 + DvMF_2426 0.10 -0.5
3,062,666 + DvMF_2426 0.10 -0.3
3,062,969 - DvMF_2426 0.25 -0.2
3,063,058 + DvMF_2426 0.30 -0.2
3,063,291 + DvMF_2426 0.41 -0.1
3,063,306 + DvMF_2426 0.42 -0.1
3,063,338 - DvMF_2426 0.44 -0.8

Or see this region's nucleotide sequence