Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2423 and DvMF_2424 are separated by 10 nucleotides DvMF_2424 and DvMF_2425 are separated by 83 nucleotides DvMF_2425 and DvMF_2426 are separated by 99 nucleotides
DvMF_2423: DvMF_2423 - hypothetical protein (RefSeq), at 3,059,914 to 3,060,930
_2423
DvMF_2424: DvMF_2424 - hypothetical protein (RefSeq), at 3,060,941 to 3,061,774
_2424
DvMF_2425: DvMF_2425 - hypothetical protein (RefSeq), at 3,061,858 to 3,062,364
_2425
DvMF_2426: DvMF_2426 - type III secretion outer membrane pore, YscC/HrcC family (RefSeq), at 3,062,464 to 3,064,464
_2426
Position (kb)
3061
3062
3063 Strain fitness (log2 ratio)
-1
0
1 at 3061.011 kb on - strand at 3061.125 kb on + strand, within DvMF_2424 at 3061.262 kb on + strand, within DvMF_2424 at 3061.269 kb on - strand, within DvMF_2424 at 3061.382 kb on + strand, within DvMF_2424 at 3061.383 kb on - strand, within DvMF_2424 at 3061.586 kb on - strand, within DvMF_2424 at 3061.736 kb on - strand at 3061.962 kb on + strand, within DvMF_2425 at 3062.135 kb on + strand, within DvMF_2425 at 3062.476 kb on + strand at 3062.491 kb on - strand at 3062.666 kb on + strand, within DvMF_2426 at 3062.666 kb on + strand, within DvMF_2426 at 3062.969 kb on - strand, within DvMF_2426 at 3063.058 kb on + strand, within DvMF_2426 at 3063.291 kb on + strand, within DvMF_2426 at 3063.306 kb on + strand, within DvMF_2426 at 3063.338 kb on - strand, within DvMF_2426
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml remove 3,061,011 - -0.5 3,061,125 + DvMF_2424 0.22 -0.1 3,061,262 + DvMF_2424 0.38 -0.1 3,061,269 - DvMF_2424 0.39 -0.9 3,061,382 + DvMF_2424 0.53 -0.3 3,061,383 - DvMF_2424 0.53 -0.9 3,061,586 - DvMF_2424 0.77 -0.2 3,061,736 - +0.6 3,061,962 + DvMF_2425 0.21 +0.2 3,062,135 + DvMF_2425 0.55 +0.1 3,062,476 + +0.0 3,062,491 - +0.6 3,062,666 + DvMF_2426 0.10 -0.5 3,062,666 + DvMF_2426 0.10 -0.3 3,062,969 - DvMF_2426 0.25 -0.2 3,063,058 + DvMF_2426 0.30 -0.2 3,063,291 + DvMF_2426 0.41 -0.1 3,063,306 + DvMF_2426 0.42 -0.1 3,063,338 - DvMF_2426 0.44 -0.8
Or see this region's nucleotide sequence