Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2364 and DvMF_2365 are separated by 611 nucleotides DvMF_2365 and DvMF_2366 are separated by 212 nucleotides
DvMF_2364: DvMF_2364 - protein TolQ (RefSeq), at 2,984,250 to 2,984,945
_2364
DvMF_2365: DvMF_2365 - outer membrane efflux protein (RefSeq), at 2,985,557 to 2,987,005
_2365
DvMF_2366: DvMF_2366 - ferric uptake regulator, Fur family (RefSeq), at 2,987,218 to 2,987,613
_2366
Position (kb)
2985
2986
2987
2988 Strain fitness (log2 ratio)
-1
0
1 at 2984.980 kb on - strand at 2985.052 kb on + strand at 2985.057 kb on + strand at 2985.082 kb on + strand at 2985.095 kb on - strand at 2985.105 kb on - strand at 2985.189 kb on + strand at 2985.197 kb on - strand at 2985.645 kb on + strand at 2985.645 kb on + strand at 2985.658 kb on - strand at 2985.658 kb on - strand at 2986.082 kb on + strand, within DvMF_2365 at 2986.090 kb on - strand, within DvMF_2365 at 2986.134 kb on - strand, within DvMF_2365 at 2986.259 kb on - strand, within DvMF_2365 at 2986.285 kb on - strand, within DvMF_2365 at 2986.566 kb on - strand, within DvMF_2365 at 2986.646 kb on + strand, within DvMF_2365 at 2986.665 kb on - strand, within DvMF_2365 at 2986.739 kb on + strand, within DvMF_2365 at 2986.863 kb on - strand at 2986.913 kb on + strand at 2986.999 kb on + strand at 2987.032 kb on - strand at 2987.124 kb on + strand at 2987.350 kb on - strand, within DvMF_2366 at 2987.639 kb on - strand at 2987.670 kb on - strand at 2987.715 kb on + strand at 2987.762 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml remove 2,984,980 - -0.2 2,985,052 + -1.5 2,985,057 + -0.6 2,985,082 + +0.0 2,985,095 - -0.2 2,985,105 - +0.4 2,985,189 + -0.6 2,985,197 - -0.2 2,985,645 + -1.0 2,985,645 + -0.5 2,985,658 - -1.3 2,985,658 - -1.0 2,986,082 + DvMF_2365 0.36 -0.9 2,986,090 - DvMF_2365 0.37 -0.8 2,986,134 - DvMF_2365 0.40 -1.1 2,986,259 - DvMF_2365 0.48 -1.3 2,986,285 - DvMF_2365 0.50 -1.7 2,986,566 - DvMF_2365 0.70 -1.6 2,986,646 + DvMF_2365 0.75 -1.1 2,986,665 - DvMF_2365 0.76 -1.0 2,986,739 + DvMF_2365 0.82 -0.9 2,986,863 - -0.8 2,986,913 + -1.4 2,986,999 + -0.1 2,987,032 - -0.7 2,987,124 + -0.1 2,987,350 - DvMF_2366 0.33 +0.2 2,987,639 - -0.2 2,987,670 - -0.1 2,987,715 + +0.2 2,987,762 + -0.0
Or see this region's nucleotide sequence