Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2354

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2353 and DvMF_2354 are separated by 393 nucleotidesDvMF_2354 and DvMF_2355 are separated by 222 nucleotides DvMF_2353: DvMF_2353 - FAD linked oxidase domain protein (RefSeq), at 2,966,817 to 2,970,431 _2353 DvMF_2354: DvMF_2354 - ATPase (AAA+ superfamily)-like protein (RefSeq), at 2,970,825 to 2,972,345 _2354 DvMF_2355: DvMF_2355 - (NiFe) hydrogenase maturation protein HypF (RefSeq), at 2,972,568 to 2,975,126 _2355 Position (kb) 2970 2971 2972 2973Strain fitness (log2 ratio) -3 -2 -1 0 1at 2970.618 kb on + strandat 2970.795 kb on - strandat 2970.828 kb on - strandat 2970.857 kb on + strandat 2971.117 kb on + strand, within DvMF_2354at 2971.143 kb on - strand, within DvMF_2354at 2971.265 kb on + strand, within DvMF_2354at 2971.341 kb on + strand, within DvMF_2354at 2971.640 kb on - strand, within DvMF_2354at 2971.659 kb on - strand, within DvMF_2354at 2971.720 kb on + strand, within DvMF_2354at 2971.819 kb on - strand, within DvMF_2354at 2972.276 kb on + strandat 2972.394 kb on - strandat 2972.637 kb on + strandat 2972.937 kb on - strand, within DvMF_2355at 2973.064 kb on - strandat 2973.309 kb on + strand, within DvMF_2355

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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2,970,618 + -1.0
2,970,795 - -3.3
2,970,828 - -1.4
2,970,857 + -1.8
2,971,117 + DvMF_2354 0.19 -1.9
2,971,143 - DvMF_2354 0.21 -1.3
2,971,265 + DvMF_2354 0.29 -1.6
2,971,341 + DvMF_2354 0.34 -1.8
2,971,640 - DvMF_2354 0.54 -1.7
2,971,659 - DvMF_2354 0.55 -0.8
2,971,720 + DvMF_2354 0.59 -1.6
2,971,819 - DvMF_2354 0.65 -0.6
2,972,276 + +0.1
2,972,394 - -1.5
2,972,637 + -0.0
2,972,937 - DvMF_2355 0.14 -2.5
2,973,064 - -0.3
2,973,309 + DvMF_2355 0.29 +1.4

Or see this region's nucleotide sequence