Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2279

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2278 and DvMF_2279 are separated by 228 nucleotidesDvMF_2279 and DvMF_2280 are separated by 568 nucleotides DvMF_2278: DvMF_2278 - no description, at 2,865,033 to 2,866,383 _2278 DvMF_2279: DvMF_2279 - glycosyl transferase group 1 (RefSeq), at 2,866,612 to 2,867,733 _2279 DvMF_2280: DvMF_2280 - NAD-dependent epimerase/dehydratase (RefSeq), at 2,868,302 to 2,869,330 _2280 Position (kb) 2866 2867 2868Strain fitness (log2 ratio) -3 -2 -1 0 1at 2865.620 kb on - strand, within DvMF_2278at 2866.449 kb on + strandat 2866.566 kb on + strandat 2866.617 kb on - strandat 2866.753 kb on + strand, within DvMF_2279at 2866.938 kb on + strand, within DvMF_2279at 2866.984 kb on + strand, within DvMF_2279at 2866.993 kb on - strand, within DvMF_2279at 2867.111 kb on - strand, within DvMF_2279at 2867.309 kb on + strand, within DvMF_2279at 2867.542 kb on - strand, within DvMF_2279at 2867.579 kb on + strand, within DvMF_2279at 2867.798 kb on + strandat 2867.856 kb on - strandat 2868.289 kb on - strandat 2868.359 kb on - strandat 2868.497 kb on + strand, within DvMF_2280at 2868.560 kb on - strand, within DvMF_2280at 2868.562 kb on + strand, within DvMF_2280at 2868.577 kb on - strand, within DvMF_2280at 2868.697 kb on + strand, within DvMF_2280

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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2,865,620 - DvMF_2278 0.43 -1.7
2,866,449 + -0.8
2,866,566 + -1.1
2,866,617 - -0.1
2,866,753 + DvMF_2279 0.13 -2.7
2,866,938 + DvMF_2279 0.29 -2.8
2,866,984 + DvMF_2279 0.33 -2.3
2,866,993 - DvMF_2279 0.34 -3.2
2,867,111 - DvMF_2279 0.44 -3.5
2,867,309 + DvMF_2279 0.62 -2.7
2,867,542 - DvMF_2279 0.83 -3.3
2,867,579 + DvMF_2279 0.86 -1.4
2,867,798 + -0.5
2,867,856 - -0.2
2,868,289 - -0.4
2,868,359 - -2.7
2,868,497 + DvMF_2280 0.19 -1.0
2,868,560 - DvMF_2280 0.25 -2.6
2,868,562 + DvMF_2280 0.25 -2.7
2,868,577 - DvMF_2280 0.27 -3.1
2,868,697 + DvMF_2280 0.38 -2.9

Or see this region's nucleotide sequence