Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2278

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2277 and DvMF_2278 are separated by 335 nucleotidesDvMF_2278 and DvMF_2279 are separated by 228 nucleotides DvMF_2277: DvMF_2277 - hydrogenase expression/formation protein HypE (RefSeq), at 2,863,672 to 2,864,697 _2277 DvMF_2278: DvMF_2278 - no description, at 2,865,033 to 2,866,383 _2278 DvMF_2279: DvMF_2279 - glycosyl transferase group 1 (RefSeq), at 2,866,612 to 2,867,733 _2279 Position (kb) 2865 2866 2867Strain fitness (log2 ratio) -3 -2 -1 0 1at 2864.224 kb on + strand, within DvMF_2277at 2864.902 kb on - strandat 2864.902 kb on - strandat 2864.902 kb on - strandat 2865.043 kb on + strandat 2865.206 kb on + strand, within DvMF_2278at 2865.214 kb on - strand, within DvMF_2278at 2865.316 kb on + strand, within DvMF_2278at 2865.620 kb on - strand, within DvMF_2278at 2866.449 kb on + strandat 2866.566 kb on + strandat 2866.617 kb on - strandat 2866.753 kb on + strand, within DvMF_2279at 2866.938 kb on + strand, within DvMF_2279at 2866.984 kb on + strand, within DvMF_2279at 2866.993 kb on - strand, within DvMF_2279at 2867.111 kb on - strand, within DvMF_2279at 2867.309 kb on + strand, within DvMF_2279

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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2,864,224 + DvMF_2277 0.54 +0.1
2,864,902 - -0.1
2,864,902 - -0.4
2,864,902 - -1.0
2,865,043 + -1.4
2,865,206 + DvMF_2278 0.13 -1.5
2,865,214 - DvMF_2278 0.13 -2.5
2,865,316 + DvMF_2278 0.21 -2.6
2,865,620 - DvMF_2278 0.43 -1.7
2,866,449 + -0.8
2,866,566 + -1.1
2,866,617 - -0.1
2,866,753 + DvMF_2279 0.13 -2.7
2,866,938 + DvMF_2279 0.29 -2.8
2,866,984 + DvMF_2279 0.33 -2.3
2,866,993 - DvMF_2279 0.34 -3.2
2,867,111 - DvMF_2279 0.44 -3.5
2,867,309 + DvMF_2279 0.62 -2.7

Or see this region's nucleotide sequence