Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2143

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2142 and DvMF_2143 are separated by 59 nucleotidesDvMF_2143 and DvMF_2144 are separated by 94 nucleotidesDvMF_2144 and DvMF_2145 overlap by 4 nucleotides DvMF_2142: DvMF_2142 - dihydroorotate oxidase B, electron transfer subunit (RefSeq), at 2,668,098 to 2,668,967 _2142 DvMF_2143: DvMF_2143 - dihydroorotate dehydrogenase family protein (RefSeq), at 2,669,027 to 2,669,953 _2143 DvMF_2144: DvMF_2144 - GCN5-related N-acetyltransferase (RefSeq), at 2,670,048 to 2,670,587 _2144 DvMF_2145: DvMF_2145 - Protein of unknown function DUF1778 (RefSeq), at 2,670,584 to 2,670,856 _2145 Position (kb) 2669 2670Strain fitness (log2 ratio) -2 -1 0 1at 2668.085 kb on + strandat 2668.469 kb on + strand, within DvMF_2142at 2668.477 kb on + strand, within DvMF_2142at 2668.582 kb on - strand, within DvMF_2142at 2669.167 kb on + strand, within DvMF_2143at 2669.197 kb on + strand, within DvMF_2143at 2669.197 kb on + strand, within DvMF_2143at 2669.485 kb on + strand, within DvMF_2143at 2669.657 kb on - strand, within DvMF_2143at 2669.665 kb on + strand, within DvMF_2143at 2669.929 kb on + strandat 2670.045 kb on + strandat 2670.045 kb on + strandat 2670.053 kb on - strandat 2670.053 kb on - strandat 2670.281 kb on + strand, within DvMF_2144at 2670.416 kb on - strand, within DvMF_2144at 2670.755 kb on + strand, within DvMF_2145

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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2,668,085 + -0.4
2,668,469 + DvMF_2142 0.43 -0.4
2,668,477 + DvMF_2142 0.44 -0.3
2,668,582 - DvMF_2142 0.56 -0.9
2,669,167 + DvMF_2143 0.15 -1.1
2,669,197 + DvMF_2143 0.18 -1.1
2,669,197 + DvMF_2143 0.18 -1.6
2,669,485 + DvMF_2143 0.49 -1.0
2,669,657 - DvMF_2143 0.68 -1.0
2,669,665 + DvMF_2143 0.69 -1.8
2,669,929 + -0.3
2,670,045 + +0.0
2,670,045 + -0.4
2,670,053 - -0.5
2,670,053 - -0.8
2,670,281 + DvMF_2144 0.43 -0.3
2,670,416 - DvMF_2144 0.68 +0.3
2,670,755 + DvMF_2145 0.63 -0.7

Or see this region's nucleotide sequence