Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2102

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2101 and DvMF_2102 are separated by 150 nucleotidesDvMF_2102 and DvMF_2103 overlap by 14 nucleotides DvMF_2101: DvMF_2101 - major facilitator superfamily MFS_1 (RefSeq), at 2,619,163 to 2,620,602 _2101 DvMF_2102: DvMF_2102 - UspA domain protein (RefSeq), at 2,620,753 to 2,621,622 _2102 DvMF_2103: DvMF_2103 - protein of unknown function DUF81 (RefSeq), at 2,621,609 to 2,622,667 _2103 Position (kb) 2620 2621 2622Strain fitness (log2 ratio) -1 0 1at 2619.847 kb on + strand, within DvMF_2101at 2619.867 kb on + strand, within DvMF_2101at 2620.007 kb on + strand, within DvMF_2101at 2620.047 kb on + strand, within DvMF_2101at 2620.142 kb on + strand, within DvMF_2101at 2620.304 kb on + strand, within DvMF_2101at 2620.358 kb on - strand, within DvMF_2101at 2620.425 kb on - strand, within DvMF_2101at 2620.439 kb on + strand, within DvMF_2101at 2620.638 kb on + strandat 2620.638 kb on + strandat 2620.638 kb on + strandat 2620.697 kb on - strandat 2620.786 kb on - strandat 2620.836 kb on - strandat 2620.889 kb on - strand, within DvMF_2102at 2620.961 kb on - strand, within DvMF_2102at 2621.067 kb on - strand, within DvMF_2102at 2621.374 kb on + strand, within DvMF_2102

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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2,619,847 + DvMF_2101 0.47 -0.4
2,619,867 + DvMF_2101 0.49 -0.9
2,620,007 + DvMF_2101 0.59 +0.1
2,620,047 + DvMF_2101 0.61 +0.3
2,620,142 + DvMF_2101 0.68 -0.2
2,620,304 + DvMF_2101 0.79 -0.4
2,620,358 - DvMF_2101 0.83 -0.7
2,620,425 - DvMF_2101 0.88 -0.7
2,620,439 + DvMF_2101 0.89 +0.1
2,620,638 + -1.2
2,620,638 + -0.6
2,620,638 + -0.4
2,620,697 - -0.1
2,620,786 - -0.6
2,620,836 - -0.3
2,620,889 - DvMF_2102 0.16 -1.0
2,620,961 - DvMF_2102 0.24 -1.0
2,621,067 - DvMF_2102 0.36 -0.8
2,621,374 + DvMF_2102 0.71 -1.3

Or see this region's nucleotide sequence