Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2095 and DvMF_2096 are separated by 19 nucleotides DvMF_2096 and DvMF_2097 are separated by 558 nucleotides DvMF_2097 and DvMF_2098 are separated by 280 nucleotides
DvMF_2095: DvMF_2095 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 2,611,155 to 2,612,570
_2095
DvMF_2096: DvMF_2096 - hypothetical protein (RefSeq), at 2,612,590 to 2,612,928
_2096
DvMF_2097: DvMF_2097 - NADPH-dependent FMN reductase (RefSeq), at 2,613,487 to 2,614,197
_2097
DvMF_2098: DvMF_2098 - major facilitator superfamily MFS_1 (RefSeq), at 2,614,478 to 2,615,878
_2098
Position (kb)
2613
2614
2615 Strain fitness (log2 ratio)
-1
0
1 at 2612.550 kb on + strand at 2612.649 kb on + strand, within DvMF_2096 at 2612.682 kb on - strand, within DvMF_2096 at 2613.064 kb on - strand at 2613.168 kb on - strand at 2613.541 kb on - strand at 2613.543 kb on + strand at 2613.718 kb on - strand, within DvMF_2097 at 2614.104 kb on - strand, within DvMF_2097 at 2614.199 kb on - strand at 2614.206 kb on + strand at 2614.232 kb on - strand at 2614.241 kb on - strand at 2614.328 kb on - strand at 2614.534 kb on - strand at 2614.712 kb on + strand, within DvMF_2098 at 2614.795 kb on + strand, within DvMF_2098 at 2614.803 kb on - strand, within DvMF_2098 at 2614.803 kb on - strand, within DvMF_2098 at 2615.104 kb on + strand, within DvMF_2098 at 2615.137 kb on - strand, within DvMF_2098
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml remove 2,612,550 + -0.6 2,612,649 + DvMF_2096 0.17 -0.4 2,612,682 - DvMF_2096 0.27 -0.4 2,613,064 - -0.1 2,613,168 - -0.3 2,613,541 - -0.1 2,613,543 + -0.5 2,613,718 - DvMF_2097 0.32 -1.5 2,614,104 - DvMF_2097 0.87 -0.6 2,614,199 - -0.5 2,614,206 + -0.7 2,614,232 - +0.3 2,614,241 - +0.2 2,614,328 - -0.8 2,614,534 - -1.0 2,614,712 + DvMF_2098 0.17 -0.2 2,614,795 + DvMF_2098 0.23 -0.7 2,614,803 - DvMF_2098 0.23 -0.7 2,614,803 - DvMF_2098 0.23 -0.4 2,615,104 + DvMF_2098 0.45 -0.4 2,615,137 - DvMF_2098 0.47 -0.6
Or see this region's nucleotide sequence