Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2097

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2095 and DvMF_2096 are separated by 19 nucleotidesDvMF_2096 and DvMF_2097 are separated by 558 nucleotidesDvMF_2097 and DvMF_2098 are separated by 280 nucleotides DvMF_2095: DvMF_2095 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 2,611,155 to 2,612,570 _2095 DvMF_2096: DvMF_2096 - hypothetical protein (RefSeq), at 2,612,590 to 2,612,928 _2096 DvMF_2097: DvMF_2097 - NADPH-dependent FMN reductase (RefSeq), at 2,613,487 to 2,614,197 _2097 DvMF_2098: DvMF_2098 - major facilitator superfamily MFS_1 (RefSeq), at 2,614,478 to 2,615,878 _2098 Position (kb) 2613 2614 2615Strain fitness (log2 ratio) -1 0 1at 2612.550 kb on + strandat 2612.649 kb on + strand, within DvMF_2096at 2612.682 kb on - strand, within DvMF_2096at 2613.064 kb on - strandat 2613.168 kb on - strandat 2613.541 kb on - strandat 2613.543 kb on + strandat 2613.718 kb on - strand, within DvMF_2097at 2614.104 kb on - strand, within DvMF_2097at 2614.199 kb on - strandat 2614.206 kb on + strandat 2614.232 kb on - strandat 2614.241 kb on - strandat 2614.328 kb on - strandat 2614.534 kb on - strandat 2614.712 kb on + strand, within DvMF_2098at 2614.795 kb on + strand, within DvMF_2098at 2614.803 kb on - strand, within DvMF_2098at 2614.803 kb on - strand, within DvMF_2098at 2615.104 kb on + strand, within DvMF_2098at 2615.137 kb on - strand, within DvMF_2098

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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2,612,550 + -0.6
2,612,649 + DvMF_2096 0.17 -0.4
2,612,682 - DvMF_2096 0.27 -0.4
2,613,064 - -0.1
2,613,168 - -0.3
2,613,541 - -0.1
2,613,543 + -0.5
2,613,718 - DvMF_2097 0.32 -1.5
2,614,104 - DvMF_2097 0.87 -0.6
2,614,199 - -0.5
2,614,206 + -0.7
2,614,232 - +0.3
2,614,241 - +0.2
2,614,328 - -0.8
2,614,534 - -1.0
2,614,712 + DvMF_2098 0.17 -0.2
2,614,795 + DvMF_2098 0.23 -0.7
2,614,803 - DvMF_2098 0.23 -0.7
2,614,803 - DvMF_2098 0.23 -0.4
2,615,104 + DvMF_2098 0.45 -0.4
2,615,137 - DvMF_2098 0.47 -0.6

Or see this region's nucleotide sequence