Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1946

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1945 and DvMF_1946 are separated by 247 nucleotidesDvMF_1946 and DvMF_1947 are separated by 194 nucleotides DvMF_1945: DvMF_1945 - threonine synthase (EC 4.2.3.1) (from data), at 2,402,038 to 2,403,516 _1945 DvMF_1946: DvMF_1946 - Phosphoribosylaminoimidazolecarboxamide formyltransferase (RefSeq), at 2,403,764 to 2,404,363 _1946 DvMF_1947: DvMF_1947 - GTP-binding proten HflX (RefSeq), at 2,404,558 to 2,406,525 _1947 Position (kb) 2403 2404 2405Strain fitness (log2 ratio) -3 -2 -1 0 1at 2402.809 kb on - strand, within DvMF_1945at 2403.039 kb on + strand, within DvMF_1945at 2403.047 kb on - strand, within DvMF_1945at 2403.047 kb on - strand, within DvMF_1945at 2403.404 kb on + strandat 2403.701 kb on - strandat 2403.902 kb on + strand, within DvMF_1946at 2403.917 kb on + strand, within DvMF_1946at 2404.014 kb on + strand, within DvMF_1946at 2404.026 kb on + strand, within DvMF_1946at 2404.071 kb on + strand, within DvMF_1946at 2404.074 kb on - strand, within DvMF_1946at 2404.212 kb on - strand, within DvMF_1946at 2404.369 kb on + strandat 2404.666 kb on + strandat 2404.746 kb on + strandat 2405.052 kb on + strand, within DvMF_1947at 2405.052 kb on + strand, within DvMF_1947

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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2,402,809 - DvMF_1945 0.52 -3.1
2,403,039 + DvMF_1945 0.68 -2.6
2,403,047 - DvMF_1945 0.68 -2.3
2,403,047 - DvMF_1945 0.68 -2.3
2,403,404 + -0.6
2,403,701 - -0.6
2,403,902 + DvMF_1946 0.23 -2.5
2,403,917 + DvMF_1946 0.26 -1.3
2,404,014 + DvMF_1946 0.42 -0.2
2,404,026 + DvMF_1946 0.44 -0.4
2,404,071 + DvMF_1946 0.51 -1.1
2,404,074 - DvMF_1946 0.52 -3.3
2,404,212 - DvMF_1946 0.75 -2.4
2,404,369 + -0.5
2,404,666 + +0.2
2,404,746 + -0.1
2,405,052 + DvMF_1947 0.25 -0.1
2,405,052 + DvMF_1947 0.25 -1.0

Or see this region's nucleotide sequence