Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1940 and DvMF_1941 overlap by 81 nucleotides DvMF_1941 and DvMF_1942 are separated by 418 nucleotides DvMF_1942 and DvMF_1943 are separated by 301 nucleotides
DvMF_1940: DvMF_1940 - Lytic transglycosylase catalytic (RefSeq), at 2,394,830 to 2,396,575
_1940
DvMF_1941: DvMF_1941 - hypothetical protein (RefSeq), at 2,396,495 to 2,396,872
_1941
DvMF_1942: DvMF_1942 - IMP cyclohydrolase (RefSeq), at 2,397,291 to 2,398,583
_1942
DvMF_1943: DvMF_1943 - ribonuclease II (RefSeq), at 2,398,885 to 2,401,092
_1943
Position (kb)
2397
2398
2399 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2396.308 kb on - strand, within DvMF_1940 at 2396.629 kb on - strand, within DvMF_1941 at 2396.730 kb on - strand, within DvMF_1941 at 2396.775 kb on - strand, within DvMF_1941 at 2396.960 kb on - strand at 2396.976 kb on + strand at 2397.367 kb on + strand at 2397.387 kb on + strand at 2397.443 kb on - strand, within DvMF_1942 at 2397.728 kb on + strand, within DvMF_1942 at 2397.736 kb on - strand, within DvMF_1942 at 2397.743 kb on - strand, within DvMF_1942 at 2397.854 kb on + strand, within DvMF_1942 at 2397.913 kb on + strand, within DvMF_1942 at 2397.923 kb on + strand, within DvMF_1942 at 2398.155 kb on - strand, within DvMF_1942 at 2398.235 kb on - strand, within DvMF_1942 at 2398.455 kb on + strand at 2398.826 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml remove 2,396,308 - DvMF_1940 0.85 -0.5 2,396,629 - DvMF_1941 0.35 +0.6 2,396,730 - DvMF_1941 0.62 -0.0 2,396,775 - DvMF_1941 0.74 +0.6 2,396,960 - -0.4 2,396,976 + -0.2 2,397,367 + -1.2 2,397,387 + -1.4 2,397,443 - DvMF_1942 0.12 -2.1 2,397,728 + DvMF_1942 0.34 -1.5 2,397,736 - DvMF_1942 0.34 -2.5 2,397,743 - DvMF_1942 0.35 -3.5 2,397,854 + DvMF_1942 0.44 -1.5 2,397,913 + DvMF_1942 0.48 -2.1 2,397,923 + DvMF_1942 0.49 -1.3 2,398,155 - DvMF_1942 0.67 -1.8 2,398,235 - DvMF_1942 0.73 -2.1 2,398,455 + -0.8 2,398,826 - -0.8
Or see this region's nucleotide sequence