Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1933

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1932 and DvMF_1933 are separated by 465 nucleotidesDvMF_1933 and DvMF_1934 are separated by 153 nucleotides DvMF_1932: DvMF_1932 - TRAP dicarboxylate transporter, DctP subunit (RefSeq), at 2,383,139 to 2,384,146 _1932 DvMF_1933: DvMF_1933 - PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq), at 2,384,612 to 2,386,036 _1933 DvMF_1934: DvMF_1934 - sulfoacetaldehyde acetyltransferase (RefSeq), at 2,386,190 to 2,387,932 _1934 Position (kb) 2384 2385 2386 2387Strain fitness (log2 ratio) -1 0 1at 2383.644 kb on + strand, within DvMF_1932at 2383.652 kb on - strand, within DvMF_1932at 2383.786 kb on - strand, within DvMF_1932at 2383.816 kb on - strand, within DvMF_1932at 2383.838 kb on - strand, within DvMF_1932at 2384.019 kb on - strand, within DvMF_1932at 2384.106 kb on + strandat 2384.257 kb on - strandat 2384.338 kb on - strandat 2384.911 kb on - strand, within DvMF_1933at 2385.597 kb on + strand, within DvMF_1933at 2385.662 kb on + strand, within DvMF_1933at 2385.670 kb on - strand, within DvMF_1933at 2385.809 kb on + strand, within DvMF_1933at 2385.927 kb on - strandat 2385.981 kb on - strandat 2386.043 kb on - strandat 2386.078 kb on + strandat 2386.312 kb on - strandat 2386.798 kb on - strand, within DvMF_1934at 2386.798 kb on - strand, within DvMF_1934

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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2,383,644 + DvMF_1932 0.50 +0.3
2,383,652 - DvMF_1932 0.51 -0.7
2,383,786 - DvMF_1932 0.64 +0.1
2,383,816 - DvMF_1932 0.67 -0.5
2,383,838 - DvMF_1932 0.69 -0.3
2,384,019 - DvMF_1932 0.87 -0.8
2,384,106 + -0.0
2,384,257 - +0.5
2,384,338 - -1.1
2,384,911 - DvMF_1933 0.21 -0.7
2,385,597 + DvMF_1933 0.69 -0.8
2,385,662 + DvMF_1933 0.74 -0.4
2,385,670 - DvMF_1933 0.74 -0.8
2,385,809 + DvMF_1933 0.84 -0.8
2,385,927 - -0.4
2,385,981 - -0.4
2,386,043 - -0.6
2,386,078 + -0.7
2,386,312 - -0.4
2,386,798 - DvMF_1934 0.35 -0.5
2,386,798 - DvMF_1934 0.35 -0.5

Or see this region's nucleotide sequence