Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1904

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1903 and DvMF_1904 are separated by 278 nucleotidesDvMF_1904 and DvMF_1905 are separated by 212 nucleotides DvMF_1903: DvMF_1903 - Haloacid dehalogenase domain protein hydrolase (RefSeq), at 2,342,404 to 2,343,045 _1903 DvMF_1904: DvMF_1904 - hypothetical protein (RefSeq), at 2,343,324 to 2,345,327 _1904 DvMF_1905: DvMF_1905 - hypothetical protein (RefSeq), at 2,345,540 to 2,347,201 _1905 Position (kb) 2343 2344 2345 2346Strain fitness (log2 ratio) -3 -2 -1 0 1at 2342.598 kb on - strand, within DvMF_1903at 2342.845 kb on - strand, within DvMF_1903at 2343.032 kb on - strandat 2343.145 kb on + strandat 2343.308 kb on + strandat 2343.344 kb on + strandat 2344.442 kb on - strand, within DvMF_1904at 2345.308 kb on + strandat 2345.369 kb on - strandat 2345.532 kb on + strandat 2345.673 kb on + strandat 2345.764 kb on - strand, within DvMF_1905at 2345.844 kb on + strand, within DvMF_1905at 2345.862 kb on - strand, within DvMF_1905at 2346.051 kb on + strand, within DvMF_1905

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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2,342,598 - DvMF_1903 0.30 -2.8
2,342,845 - DvMF_1903 0.69 -2.5
2,343,032 - -0.1
2,343,145 + -0.2
2,343,308 + -0.3
2,343,344 + -1.9
2,344,442 - DvMF_1904 0.56 -1.7
2,345,308 + -0.6
2,345,369 - -0.2
2,345,532 + -0.8
2,345,673 + +0.5
2,345,764 - DvMF_1905 0.13 +0.5
2,345,844 + DvMF_1905 0.18 +0.5
2,345,862 - DvMF_1905 0.19 +0.5
2,346,051 + DvMF_1905 0.31 -0.2

Or see this region's nucleotide sequence