Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1894

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1892 and DvMF_1893 overlap by 4 nucleotidesDvMF_1893 and DvMF_1894 are separated by 143 nucleotidesDvMF_1894 and DvMF_1895 are separated by 156 nucleotides DvMF_1892: DvMF_1892 - CMP-N-acetylneuraminic acid synthetase (RefSeq), at 2,328,895 to 2,330,853 _1892 DvMF_1893: DvMF_1893 - acylneuraminate cytidylyltransferase (RefSeq), at 2,330,850 to 2,331,545 _1893 DvMF_1894: DvMF_1894 - N-acylneuraminate-9-phosphate synthase (RefSeq), at 2,331,689 to 2,332,753 _1894 DvMF_1895: DvMF_1895 - hypothetical protein (RefSeq), at 2,332,910 to 2,334,592 _1895 Position (kb) 2331 2332 2333Strain fitness (log2 ratio) -3 -2 -1 0 1at 2330.709 kb on - strandat 2330.734 kb on + strandat 2330.892 kb on + strandat 2330.947 kb on - strand, within DvMF_1893at 2331.145 kb on - strand, within DvMF_1893at 2331.257 kb on + strand, within DvMF_1893at 2331.373 kb on + strand, within DvMF_1893at 2331.378 kb on + strand, within DvMF_1893at 2331.405 kb on - strand, within DvMF_1893at 2331.420 kb on - strand, within DvMF_1893at 2331.584 kb on + strandat 2331.687 kb on - strandat 2331.898 kb on + strand, within DvMF_1894at 2332.027 kb on - strand, within DvMF_1894at 2332.458 kb on - strand, within DvMF_1894at 2332.667 kb on - strandat 2332.844 kb on - strandat 2333.054 kb on - strandat 2333.109 kb on - strand, within DvMF_1895at 2333.129 kb on - strand, within DvMF_1895at 2333.204 kb on - strand, within DvMF_1895at 2333.487 kb on + strand, within DvMF_1895at 2333.490 kb on - strand, within DvMF_1895at 2333.690 kb on - strand, within DvMF_1895at 2333.707 kb on + strand, within DvMF_1895at 2333.715 kb on - strand, within DvMF_1895

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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2,330,709 - -0.4
2,330,734 + -0.3
2,330,892 + -2.0
2,330,947 - DvMF_1893 0.14 -3.2
2,331,145 - DvMF_1893 0.42 -1.6
2,331,257 + DvMF_1893 0.58 -1.4
2,331,373 + DvMF_1893 0.75 -1.4
2,331,378 + DvMF_1893 0.76 -3.1
2,331,405 - DvMF_1893 0.80 -1.7
2,331,420 - DvMF_1893 0.82 -2.5
2,331,584 + -0.8
2,331,687 - -1.1
2,331,898 + DvMF_1894 0.20 -1.8
2,332,027 - DvMF_1894 0.32 -2.2
2,332,458 - DvMF_1894 0.72 -2.8
2,332,667 - -2.0
2,332,844 - -1.1
2,333,054 - -3.4
2,333,109 - DvMF_1895 0.12 -2.1
2,333,129 - DvMF_1895 0.13 -1.8
2,333,204 - DvMF_1895 0.17 -1.1
2,333,487 + DvMF_1895 0.34 -2.3
2,333,490 - DvMF_1895 0.34 -1.4
2,333,690 - DvMF_1895 0.46 -2.3
2,333,707 + DvMF_1895 0.47 -1.9
2,333,715 - DvMF_1895 0.48 -2.3

Or see this region's nucleotide sequence