Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1891 and DvMF_1892 are separated by 7 nucleotides DvMF_1892 and DvMF_1893 overlap by 4 nucleotides DvMF_1893 and DvMF_1894 are separated by 143 nucleotides
DvMF_1891: DvMF_1891 - Glutamine--scyllo-inositol transaminase (RefSeq), at 2,327,706 to 2,328,887
_1891
DvMF_1892: DvMF_1892 - CMP-N-acetylneuraminic acid synthetase (RefSeq), at 2,328,895 to 2,330,853
_1892
DvMF_1893: DvMF_1893 - acylneuraminate cytidylyltransferase (RefSeq), at 2,330,850 to 2,331,545
_1893
DvMF_1894: DvMF_1894 - N-acylneuraminate-9-phosphate synthase (RefSeq), at 2,331,689 to 2,332,753
_1894
Position (kb)
2328
2329
2330
2331 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2327.967 kb on - strand, within DvMF_1891 at 2327.980 kb on - strand, within DvMF_1891 at 2328.146 kb on - strand, within DvMF_1891 at 2328.323 kb on + strand, within DvMF_1891 at 2328.393 kb on + strand, within DvMF_1891 at 2328.489 kb on - strand, within DvMF_1891 at 2328.681 kb on + strand, within DvMF_1891 at 2328.701 kb on + strand, within DvMF_1891 at 2328.875 kb on + strand at 2328.994 kb on - strand at 2329.048 kb on + strand at 2329.255 kb on - strand, within DvMF_1892 at 2329.336 kb on - strand, within DvMF_1892 at 2329.465 kb on + strand, within DvMF_1892 at 2329.480 kb on - strand, within DvMF_1892 at 2329.543 kb on - strand, within DvMF_1892 at 2329.579 kb on + strand, within DvMF_1892 at 2329.702 kb on - strand, within DvMF_1892 at 2330.150 kb on + strand, within DvMF_1892 at 2330.179 kb on + strand, within DvMF_1892 at 2330.179 kb on + strand, within DvMF_1892 at 2330.403 kb on - strand, within DvMF_1892 at 2330.643 kb on - strand, within DvMF_1892 at 2330.709 kb on - strand at 2330.734 kb on + strand at 2330.892 kb on + strand at 2330.947 kb on - strand, within DvMF_1893 at 2331.145 kb on - strand, within DvMF_1893 at 2331.257 kb on + strand, within DvMF_1893 at 2331.373 kb on + strand, within DvMF_1893 at 2331.378 kb on + strand, within DvMF_1893 at 2331.405 kb on - strand, within DvMF_1893 at 2331.420 kb on - strand, within DvMF_1893 at 2331.584 kb on + strand at 2331.687 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml remove 2,327,967 - DvMF_1891 0.22 -1.9 2,327,980 - DvMF_1891 0.23 -0.9 2,328,146 - DvMF_1891 0.37 -1.7 2,328,323 + DvMF_1891 0.52 -1.9 2,328,393 + DvMF_1891 0.58 -2.0 2,328,489 - DvMF_1891 0.66 -3.0 2,328,681 + DvMF_1891 0.82 -1.5 2,328,701 + DvMF_1891 0.84 -1.6 2,328,875 + -0.4 2,328,994 - -1.7 2,329,048 + -1.9 2,329,255 - DvMF_1892 0.18 -1.4 2,329,336 - DvMF_1892 0.23 -2.1 2,329,465 + DvMF_1892 0.29 -2.2 2,329,480 - DvMF_1892 0.30 -1.1 2,329,543 - DvMF_1892 0.33 -2.6 2,329,579 + DvMF_1892 0.35 -0.6 2,329,702 - DvMF_1892 0.41 -2.6 2,330,150 + DvMF_1892 0.64 -3.2 2,330,179 + DvMF_1892 0.66 -1.7 2,330,179 + DvMF_1892 0.66 -1.6 2,330,403 - DvMF_1892 0.77 -0.6 2,330,643 - DvMF_1892 0.89 -1.6 2,330,709 - -0.4 2,330,734 + -0.3 2,330,892 + -2.0 2,330,947 - DvMF_1893 0.14 -3.2 2,331,145 - DvMF_1893 0.42 -1.6 2,331,257 + DvMF_1893 0.58 -1.4 2,331,373 + DvMF_1893 0.75 -1.4 2,331,378 + DvMF_1893 0.76 -3.1 2,331,405 - DvMF_1893 0.80 -1.7 2,331,420 - DvMF_1893 0.82 -2.5 2,331,584 + -0.8 2,331,687 - -1.1
Or see this region's nucleotide sequence