Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1892

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1891 and DvMF_1892 are separated by 7 nucleotidesDvMF_1892 and DvMF_1893 overlap by 4 nucleotidesDvMF_1893 and DvMF_1894 are separated by 143 nucleotides DvMF_1891: DvMF_1891 - Glutamine--scyllo-inositol transaminase (RefSeq), at 2,327,706 to 2,328,887 _1891 DvMF_1892: DvMF_1892 - CMP-N-acetylneuraminic acid synthetase (RefSeq), at 2,328,895 to 2,330,853 _1892 DvMF_1893: DvMF_1893 - acylneuraminate cytidylyltransferase (RefSeq), at 2,330,850 to 2,331,545 _1893 DvMF_1894: DvMF_1894 - N-acylneuraminate-9-phosphate synthase (RefSeq), at 2,331,689 to 2,332,753 _1894 Position (kb) 2328 2329 2330 2331Strain fitness (log2 ratio) -3 -2 -1 0 1at 2327.967 kb on - strand, within DvMF_1891at 2327.980 kb on - strand, within DvMF_1891at 2328.146 kb on - strand, within DvMF_1891at 2328.323 kb on + strand, within DvMF_1891at 2328.393 kb on + strand, within DvMF_1891at 2328.489 kb on - strand, within DvMF_1891at 2328.681 kb on + strand, within DvMF_1891at 2328.701 kb on + strand, within DvMF_1891at 2328.875 kb on + strandat 2328.994 kb on - strandat 2329.048 kb on + strandat 2329.255 kb on - strand, within DvMF_1892at 2329.336 kb on - strand, within DvMF_1892at 2329.465 kb on + strand, within DvMF_1892at 2329.480 kb on - strand, within DvMF_1892at 2329.543 kb on - strand, within DvMF_1892at 2329.579 kb on + strand, within DvMF_1892at 2329.702 kb on - strand, within DvMF_1892at 2330.150 kb on + strand, within DvMF_1892at 2330.179 kb on + strand, within DvMF_1892at 2330.179 kb on + strand, within DvMF_1892at 2330.403 kb on - strand, within DvMF_1892at 2330.643 kb on - strand, within DvMF_1892at 2330.709 kb on - strandat 2330.734 kb on + strandat 2330.892 kb on + strandat 2330.947 kb on - strand, within DvMF_1893at 2331.145 kb on - strand, within DvMF_1893at 2331.257 kb on + strand, within DvMF_1893at 2331.373 kb on + strand, within DvMF_1893at 2331.378 kb on + strand, within DvMF_1893at 2331.405 kb on - strand, within DvMF_1893at 2331.420 kb on - strand, within DvMF_1893at 2331.584 kb on + strandat 2331.687 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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2,327,967 - DvMF_1891 0.22 -1.9
2,327,980 - DvMF_1891 0.23 -0.9
2,328,146 - DvMF_1891 0.37 -1.7
2,328,323 + DvMF_1891 0.52 -1.9
2,328,393 + DvMF_1891 0.58 -2.0
2,328,489 - DvMF_1891 0.66 -3.0
2,328,681 + DvMF_1891 0.82 -1.5
2,328,701 + DvMF_1891 0.84 -1.6
2,328,875 + -0.4
2,328,994 - -1.7
2,329,048 + -1.9
2,329,255 - DvMF_1892 0.18 -1.4
2,329,336 - DvMF_1892 0.23 -2.1
2,329,465 + DvMF_1892 0.29 -2.2
2,329,480 - DvMF_1892 0.30 -1.1
2,329,543 - DvMF_1892 0.33 -2.6
2,329,579 + DvMF_1892 0.35 -0.6
2,329,702 - DvMF_1892 0.41 -2.6
2,330,150 + DvMF_1892 0.64 -3.2
2,330,179 + DvMF_1892 0.66 -1.7
2,330,179 + DvMF_1892 0.66 -1.6
2,330,403 - DvMF_1892 0.77 -0.6
2,330,643 - DvMF_1892 0.89 -1.6
2,330,709 - -0.4
2,330,734 + -0.3
2,330,892 + -2.0
2,330,947 - DvMF_1893 0.14 -3.2
2,331,145 - DvMF_1893 0.42 -1.6
2,331,257 + DvMF_1893 0.58 -1.4
2,331,373 + DvMF_1893 0.75 -1.4
2,331,378 + DvMF_1893 0.76 -3.1
2,331,405 - DvMF_1893 0.80 -1.7
2,331,420 - DvMF_1893 0.82 -2.5
2,331,584 + -0.8
2,331,687 - -1.1

Or see this region's nucleotide sequence