Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1891

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1890 and DvMF_1891 are separated by 389 nucleotidesDvMF_1891 and DvMF_1892 are separated by 7 nucleotides DvMF_1890: DvMF_1890 - iron-containing alcohol dehydrogenase (RefSeq), at 2,326,240 to 2,327,316 _1890 DvMF_1891: DvMF_1891 - Glutamine--scyllo-inositol transaminase (RefSeq), at 2,327,706 to 2,328,887 _1891 DvMF_1892: DvMF_1892 - CMP-N-acetylneuraminic acid synthetase (RefSeq), at 2,328,895 to 2,330,853 _1892 Position (kb) 2327 2328 2329Strain fitness (log2 ratio) -3 -2 -1 0 1at 2326.787 kb on - strand, within DvMF_1890at 2326.834 kb on - strand, within DvMF_1890at 2326.876 kb on + strand, within DvMF_1890at 2327.023 kb on + strand, within DvMF_1890at 2327.056 kb on + strand, within DvMF_1890at 2327.160 kb on + strand, within DvMF_1890at 2327.174 kb on + strand, within DvMF_1890at 2327.196 kb on + strand, within DvMF_1890at 2327.204 kb on - strand, within DvMF_1890at 2327.255 kb on + strandat 2327.335 kb on - strandat 2327.405 kb on - strandat 2327.515 kb on - strandat 2327.552 kb on - strandat 2327.703 kb on - strandat 2327.749 kb on - strandat 2327.749 kb on - strandat 2327.798 kb on - strandat 2327.798 kb on - strandat 2327.967 kb on - strand, within DvMF_1891at 2327.980 kb on - strand, within DvMF_1891at 2328.146 kb on - strand, within DvMF_1891at 2328.323 kb on + strand, within DvMF_1891at 2328.393 kb on + strand, within DvMF_1891at 2328.489 kb on - strand, within DvMF_1891at 2328.681 kb on + strand, within DvMF_1891at 2328.701 kb on + strand, within DvMF_1891at 2328.875 kb on + strandat 2328.994 kb on - strandat 2329.048 kb on + strandat 2329.255 kb on - strand, within DvMF_1892at 2329.336 kb on - strand, within DvMF_1892at 2329.465 kb on + strand, within DvMF_1892at 2329.480 kb on - strand, within DvMF_1892at 2329.543 kb on - strand, within DvMF_1892at 2329.579 kb on + strand, within DvMF_1892at 2329.702 kb on - strand, within DvMF_1892

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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2,326,787 - DvMF_1890 0.51 -1.8
2,326,834 - DvMF_1890 0.55 -1.9
2,326,876 + DvMF_1890 0.59 -2.0
2,327,023 + DvMF_1890 0.73 -2.3
2,327,056 + DvMF_1890 0.76 -3.3
2,327,160 + DvMF_1890 0.85 -1.9
2,327,174 + DvMF_1890 0.87 -1.5
2,327,196 + DvMF_1890 0.89 -1.8
2,327,204 - DvMF_1890 0.90 -2.2
2,327,255 + -1.5
2,327,335 - -1.2
2,327,405 - -0.4
2,327,515 - +1.2
2,327,552 - -0.4
2,327,703 - -1.6
2,327,749 - -3.5
2,327,749 - -1.3
2,327,798 - -2.4
2,327,798 - -1.6
2,327,967 - DvMF_1891 0.22 -1.9
2,327,980 - DvMF_1891 0.23 -0.9
2,328,146 - DvMF_1891 0.37 -1.7
2,328,323 + DvMF_1891 0.52 -1.9
2,328,393 + DvMF_1891 0.58 -2.0
2,328,489 - DvMF_1891 0.66 -3.0
2,328,681 + DvMF_1891 0.82 -1.5
2,328,701 + DvMF_1891 0.84 -1.6
2,328,875 + -0.4
2,328,994 - -1.7
2,329,048 + -1.9
2,329,255 - DvMF_1892 0.18 -1.4
2,329,336 - DvMF_1892 0.23 -2.1
2,329,465 + DvMF_1892 0.29 -2.2
2,329,480 - DvMF_1892 0.30 -1.1
2,329,543 - DvMF_1892 0.33 -2.6
2,329,579 + DvMF_1892 0.35 -0.6
2,329,702 - DvMF_1892 0.41 -2.6

Or see this region's nucleotide sequence