Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1855 and DvMF_1856 are separated by 56 nucleotides DvMF_1856 and DvMF_1857 are separated by 303 nucleotides DvMF_1857 and DvMF_1858 are separated by 576 nucleotides
DvMF_1855: DvMF_1855 - glycosyltransferase-like protein (RefSeq), at 2,269,362 to 2,270,138
_1855
DvMF_1856: DvMF_1856 - hypothetical protein (RefSeq), at 2,270,195 to 2,270,572
_1856
DvMF_1857: DvMF_1857 - hypothetical protein (RefSeq), at 2,270,876 to 2,271,508
_1857
DvMF_1858: DvMF_1858 - multi-sensor hybrid histidine kinase (RefSeq), at 2,272,085 to 2,275,660
_1858
Position (kb)
2270
2271
2272 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2269.879 kb on + strand, within DvMF_1855 at 2269.887 kb on - strand, within DvMF_1855 at 2270.019 kb on - strand, within DvMF_1855 at 2270.065 kb on - strand at 2270.065 kb on - strand at 2270.065 kb on - strand at 2270.065 kb on - strand at 2270.192 kb on + strand at 2270.712 kb on + strand at 2270.712 kb on + strand at 2270.836 kb on + strand at 2270.861 kb on - strand at 2270.904 kb on + strand at 2270.939 kb on - strand at 2271.271 kb on - strand, within DvMF_1857 at 2271.392 kb on + strand, within DvMF_1857 at 2271.392 kb on + strand, within DvMF_1857 at 2271.392 kb on + strand, within DvMF_1857 at 2271.488 kb on - strand at 2271.594 kb on + strand at 2271.594 kb on + strand at 2271.594 kb on + strand at 2271.594 kb on + strand at 2271.594 kb on + strand at 2271.594 kb on + strand at 2271.602 kb on - strand at 2271.602 kb on - strand at 2271.602 kb on - strand at 2271.602 kb on - strand at 2271.602 kb on - strand at 2271.642 kb on - strand at 2271.684 kb on - strand at 2271.686 kb on + strand at 2271.913 kb on - strand at 2272.042 kb on - strand at 2272.345 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml remove 2,269,879 + DvMF_1855 0.67 -0.9 2,269,887 - DvMF_1855 0.68 -0.4 2,270,019 - DvMF_1855 0.85 +0.1 2,270,065 - +0.4 2,270,065 - -0.1 2,270,065 - -0.4 2,270,065 - +0.4 2,270,192 + -0.6 2,270,712 + -1.4 2,270,712 + -0.1 2,270,836 + -0.1 2,270,861 - -0.8 2,270,904 + -3.4 2,270,939 - -1.2 2,271,271 - DvMF_1857 0.62 -1.4 2,271,392 + DvMF_1857 0.82 -2.6 2,271,392 + DvMF_1857 0.82 -2.5 2,271,392 + DvMF_1857 0.82 -0.7 2,271,488 - -1.1 2,271,594 + +0.2 2,271,594 + +0.3 2,271,594 + -0.6 2,271,594 + -0.1 2,271,594 + -0.1 2,271,594 + +0.2 2,271,602 - -0.1 2,271,602 - +0.2 2,271,602 - +0.0 2,271,602 - +0.2 2,271,602 - -0.0 2,271,642 - +0.3 2,271,684 - +0.0 2,271,686 + +0.2 2,271,913 - +0.2 2,272,042 - -1.0 2,272,345 - -0.2
Or see this region's nucleotide sequence