Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1818

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1817 and DvMF_1818 are separated by 551 nucleotidesDvMF_1818 and DvMF_1819 are separated by 34 nucleotides DvMF_1817: DvMF_1817 - chemotaxis protein CheX, putative (RefSeq), at 2,217,736 to 2,218,200 _1817 DvMF_1818: DvMF_1818 - Radical SAM domain protein (RefSeq), at 2,218,752 to 2,219,468 _1818 DvMF_1819: DvMF_1819 - anaerobic ribonucleoside triphosphate reductase (RefSeq), at 2,219,503 to 2,221,413 _1819 Position (kb) 2218 2219 2220Strain fitness (log2 ratio) -2 -1 0 1at 2217.953 kb on - strand, within DvMF_1817at 2218.537 kb on - strandat 2218.970 kb on + strand, within DvMF_1818at 2218.978 kb on - strand, within DvMF_1818at 2219.233 kb on - strand, within DvMF_1818at 2219.349 kb on - strand, within DvMF_1818at 2219.408 kb on - strandat 2219.501 kb on + strandat 2219.501 kb on + strandat 2219.509 kb on - strandat 2219.509 kb on - strandat 2219.750 kb on + strand, within DvMF_1819at 2219.789 kb on - strand, within DvMF_1819at 2219.887 kb on + strand, within DvMF_1819at 2219.887 kb on + strand, within DvMF_1819at 2219.887 kb on + strand, within DvMF_1819at 2220.053 kb on + strand, within DvMF_1819at 2220.364 kb on - strand, within DvMF_1819

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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2,217,953 - DvMF_1817 0.47 -0.9
2,218,537 - -1.0
2,218,970 + DvMF_1818 0.30 -1.2
2,218,978 - DvMF_1818 0.32 -1.8
2,219,233 - DvMF_1818 0.67 -1.5
2,219,349 - DvMF_1818 0.83 -0.1
2,219,408 - -0.4
2,219,501 + +0.0
2,219,501 + -0.2
2,219,509 - -0.5
2,219,509 - -1.1
2,219,750 + DvMF_1819 0.13 -0.3
2,219,789 - DvMF_1819 0.15 -1.1
2,219,887 + DvMF_1819 0.20 +0.4
2,219,887 + DvMF_1819 0.20 -0.2
2,219,887 + DvMF_1819 0.20 -0.2
2,220,053 + DvMF_1819 0.29 +0.7
2,220,364 - DvMF_1819 0.45 -0.5

Or see this region's nucleotide sequence