Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1764 and DvMF_1765 are separated by 24 nucleotides DvMF_1765 and DvMF_1766 are separated by 64 nucleotides DvMF_1766 and DvMF_1767 are separated by 1 nucleotides DvMF_1767 and DvMF_1768 overlap by 4 nucleotides
DvMF_1764: DvMF_1764 - protein of unknown function DUF81 (RefSeq), at 2,160,934 to 2,161,911
_1764
DvMF_1765: DvMF_1765 - hypothetical protein (RefSeq), at 2,161,936 to 2,162,355
_1765
DvMF_1766: DvMF_1766 - sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family (RefSeq), at 2,162,420 to 2,164,123
_1766
DvMF_1767: DvMF_1767 - hypothetical protein (RefSeq), at 2,164,125 to 2,164,472
_1767
DvMF_1768: DvMF_1768 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,164,469 to 2,166,199
_1768
Position (kb)
2162
2163
2164
2165 Strain fitness (log2 ratio)
-2
-1
0
1 at 2162.840 kb on + strand, within DvMF_1766 at 2163.093 kb on + strand, within DvMF_1766 at 2163.197 kb on + strand, within DvMF_1766 at 2163.226 kb on - strand, within DvMF_1766 at 2163.316 kb on + strand, within DvMF_1766 at 2163.316 kb on + strand, within DvMF_1766 at 2163.371 kb on + strand, within DvMF_1766 at 2163.379 kb on - strand, within DvMF_1766 at 2163.430 kb on - strand, within DvMF_1766 at 2163.460 kb on + strand, within DvMF_1766 at 2163.483 kb on + strand, within DvMF_1766 at 2163.574 kb on - strand, within DvMF_1766 at 2163.710 kb on + strand, within DvMF_1766 at 2163.727 kb on + strand, within DvMF_1766 at 2163.728 kb on - strand, within DvMF_1766 at 2163.780 kb on + strand, within DvMF_1766 at 2163.874 kb on + strand, within DvMF_1766 at 2163.990 kb on - strand at 2164.125 kb on - strand at 2164.154 kb on - strand at 2164.342 kb on + strand, within DvMF_1767 at 2164.423 kb on - strand, within DvMF_1767 at 2164.651 kb on - strand, within DvMF_1768 at 2164.790 kb on - strand, within DvMF_1768 at 2164.942 kb on + strand, within DvMF_1768 at 2164.950 kb on - strand, within DvMF_1768 at 2164.950 kb on - strand, within DvMF_1768 at 2164.950 kb on - strand, within DvMF_1768 at 2165.009 kb on + strand, within DvMF_1768 at 2165.080 kb on + strand, within DvMF_1768
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml remove 2,162,840 + DvMF_1766 0.25 -2.0 2,163,093 + DvMF_1766 0.39 +0.5 2,163,197 + DvMF_1766 0.46 -2.1 2,163,226 - DvMF_1766 0.47 -2.3 2,163,316 + DvMF_1766 0.53 -1.3 2,163,316 + DvMF_1766 0.53 -1.1 2,163,371 + DvMF_1766 0.56 -1.2 2,163,379 - DvMF_1766 0.56 -1.0 2,163,430 - DvMF_1766 0.59 -1.7 2,163,460 + DvMF_1766 0.61 -1.6 2,163,483 + DvMF_1766 0.62 -1.7 2,163,574 - DvMF_1766 0.68 -1.8 2,163,710 + DvMF_1766 0.76 -1.2 2,163,727 + DvMF_1766 0.77 -1.4 2,163,728 - DvMF_1766 0.77 -1.6 2,163,780 + DvMF_1766 0.80 -1.5 2,163,874 + DvMF_1766 0.85 -1.4 2,163,990 - -1.9 2,164,125 - +0.6 2,164,154 - +0.3 2,164,342 + DvMF_1767 0.62 -0.3 2,164,423 - DvMF_1767 0.86 -0.7 2,164,651 - DvMF_1768 0.11 -0.5 2,164,790 - DvMF_1768 0.19 +0.5 2,164,942 + DvMF_1768 0.27 +0.8 2,164,950 - DvMF_1768 0.28 +0.1 2,164,950 - DvMF_1768 0.28 +0.3 2,164,950 - DvMF_1768 0.28 +0.2 2,165,009 + DvMF_1768 0.31 +0.5 2,165,080 + DvMF_1768 0.35 +0.5
Or see this region's nucleotide sequence