Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1721 and DvMF_1722 are separated by 500 nucleotides DvMF_1722 and DvMF_1723 are separated by 269 nucleotides DvMF_1723 and DvMF_1724 are separated by 109 nucleotides
DvMF_1721: DvMF_1721 - Phenylacetate--CoA ligase (RefSeq), at 2,104,713 to 2,106,008
_1721
DvMF_1722: DvMF_1722 - phosphoribosylamine--glycine ligase (RefSeq), at 2,106,509 to 2,107,786
_1722
DvMF_1723: DvMF_1723 - phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq), at 2,108,056 to 2,108,556
_1723
DvMF_1724: DvMF_1724 - no description, at 2,108,666 to 2,108,806
_1724
Position (kb)
2106
2107
2108 Strain fitness (log2 ratio)
-2
-1
0
1 at 2105.604 kb on + strand, within DvMF_1721 at 2105.675 kb on + strand, within DvMF_1721 at 2105.847 kb on - strand, within DvMF_1721 at 2105.851 kb on + strand, within DvMF_1721 at 2105.932 kb on + strand at 2105.932 kb on + strand at 2105.932 kb on + strand at 2105.932 kb on + strand at 2105.940 kb on - strand at 2105.940 kb on - strand at 2105.944 kb on + strand at 2105.961 kb on + strand at 2106.547 kb on + strand at 2106.819 kb on - strand, within DvMF_1722 at 2106.882 kb on + strand, within DvMF_1722 at 2107.209 kb on + strand, within DvMF_1722 at 2107.273 kb on - strand, within DvMF_1722 at 2107.287 kb on - strand, within DvMF_1722 at 2107.867 kb on + strand at 2108.100 kb on - strand at 2108.102 kb on + strand at 2108.102 kb on + strand at 2108.102 kb on + strand at 2108.110 kb on - strand, within DvMF_1723 at 2108.110 kb on - strand, within DvMF_1723 at 2108.403 kb on - strand, within DvMF_1723 at 2108.413 kb on - strand, within DvMF_1723 at 2108.583 kb on + strand at 2108.583 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml remove 2,105,604 + DvMF_1721 0.69 -2.5 2,105,675 + DvMF_1721 0.74 -0.2 2,105,847 - DvMF_1721 0.88 -0.3 2,105,851 + DvMF_1721 0.88 -0.4 2,105,932 + +0.3 2,105,932 + -0.9 2,105,932 + -0.7 2,105,932 + -0.7 2,105,940 - -0.1 2,105,940 - -1.3 2,105,944 + -0.9 2,105,961 + -0.3 2,106,547 + -1.9 2,106,819 - DvMF_1722 0.24 -1.8 2,106,882 + DvMF_1722 0.29 -0.8 2,107,209 + DvMF_1722 0.55 -0.5 2,107,273 - DvMF_1722 0.60 -1.1 2,107,287 - DvMF_1722 0.61 -1.0 2,107,867 + -0.1 2,108,100 - -0.1 2,108,102 + -0.4 2,108,102 + -0.7 2,108,102 + -1.0 2,108,110 - DvMF_1723 0.11 -0.8 2,108,110 - DvMF_1723 0.11 -1.1 2,108,403 - DvMF_1723 0.69 -0.8 2,108,413 - DvMF_1723 0.71 -0.9 2,108,583 + -0.1 2,108,583 + -0.2
Or see this region's nucleotide sequence