Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1712

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1711 and DvMF_1712 are separated by 428 nucleotidesDvMF_1712 and DvMF_1713 are separated by 393 nucleotides DvMF_1711: DvMF_1711 - protein of unknown function DUF81 (RefSeq), at 2,089,958 to 2,091,022 _1711 DvMF_1712: DvMF_1712 - hypothetical protein (RefSeq), at 2,091,451 to 2,091,708 _1712 DvMF_1713: DvMF_1713 - DNA polymerase I (RefSeq), at 2,092,102 to 2,094,720 _1713 Position (kb) 2091 2092Strain fitness (log2 ratio) -1 0 1at 2090.693 kb on - strand, within DvMF_1711at 2090.820 kb on + strand, within DvMF_1711at 2090.849 kb on - strand, within DvMF_1711at 2090.956 kb on - strandat 2091.133 kb on - strandat 2091.401 kb on - strandat 2091.436 kb on + strandat 2091.459 kb on - strandat 2091.459 kb on - strandat 2091.516 kb on + strand, within DvMF_1712at 2091.853 kb on + strandat 2091.861 kb on - strandat 2091.861 kb on - strandat 2091.895 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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2,090,693 - DvMF_1711 0.69 -0.4
2,090,820 + DvMF_1711 0.81 -0.5
2,090,849 - DvMF_1711 0.84 -0.2
2,090,956 - -0.0
2,091,133 - +0.1
2,091,401 - -0.3
2,091,436 + -0.4
2,091,459 - +0.1
2,091,459 - -0.4
2,091,516 + DvMF_1712 0.25 -1.2
2,091,853 + -0.6
2,091,861 - -0.1
2,091,861 - -0.5
2,091,895 + -0.1

Or see this region's nucleotide sequence