Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1693

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1692 and DvMF_1693 are separated by 454 nucleotidesDvMF_1693 and DvMF_1694 are separated by 44 nucleotides DvMF_1692: DvMF_1692 - PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq), at 2,060,288 to 2,061,853 _1692 DvMF_1693: DvMF_1693 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 2,062,308 to 2,064,083 _1693 DvMF_1694: DvMF_1694 - cytochrome c family protein (RefSeq), at 2,064,128 to 2,065,822 _1694 Position (kb) 2062 2063 2064 2065Strain fitness (log2 ratio) -1 0 1at 2061.413 kb on - strand, within DvMF_1692at 2061.433 kb on - strand, within DvMF_1692at 2061.493 kb on + strand, within DvMF_1692at 2061.529 kb on - strand, within DvMF_1692at 2061.698 kb on + strandat 2061.706 kb on - strandat 2061.748 kb on - strandat 2061.763 kb on + strandat 2061.763 kb on + strandat 2061.878 kb on + strandat 2061.939 kb on + strandat 2062.372 kb on - strandat 2062.417 kb on + strandat 2062.439 kb on + strandat 2062.643 kb on + strand, within DvMF_1693at 2062.675 kb on + strand, within DvMF_1693at 2062.748 kb on - strand, within DvMF_1693at 2063.330 kb on + strand, within DvMF_1693at 2063.345 kb on + strand, within DvMF_1693at 2063.403 kb on + strand, within DvMF_1693at 2063.511 kb on - strand, within DvMF_1693at 2063.874 kb on + strand, within DvMF_1693at 2063.924 kb on + strandat 2063.924 kb on + strandat 2063.924 kb on + strandat 2063.934 kb on + strandat 2063.934 kb on + strandat 2064.195 kb on - strandat 2064.271 kb on + strandat 2064.333 kb on + strand, within DvMF_1694at 2064.504 kb on - strand, within DvMF_1694at 2064.506 kb on + strand, within DvMF_1694at 2064.733 kb on + strand, within DvMF_1694at 2064.769 kb on - strand, within DvMF_1694at 2064.793 kb on + strand, within DvMF_1694at 2064.951 kb on + strand, within DvMF_1694at 2064.951 kb on + strand, within DvMF_1694at 2064.959 kb on - strand, within DvMF_1694at 2064.959 kb on - strand, within DvMF_1694

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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2,061,413 - DvMF_1692 0.72 -0.5
2,061,433 - DvMF_1692 0.73 +1.4
2,061,493 + DvMF_1692 0.77 -1.1
2,061,529 - DvMF_1692 0.79 -0.6
2,061,698 + +0.1
2,061,706 - -0.8
2,061,748 - -0.6
2,061,763 + -1.0
2,061,763 + -0.1
2,061,878 + -0.4
2,061,939 + +0.6
2,062,372 - -1.1
2,062,417 + -0.8
2,062,439 + +0.3
2,062,643 + DvMF_1693 0.19 -1.0
2,062,675 + DvMF_1693 0.21 -1.7
2,062,748 - DvMF_1693 0.25 -1.4
2,063,330 + DvMF_1693 0.58 -1.2
2,063,345 + DvMF_1693 0.58 -0.7
2,063,403 + DvMF_1693 0.62 -0.7
2,063,511 - DvMF_1693 0.68 -1.0
2,063,874 + DvMF_1693 0.88 -0.7
2,063,924 + -1.1
2,063,924 + +0.2
2,063,924 + -0.5
2,063,934 + -1.0
2,063,934 + -1.1
2,064,195 - -0.3
2,064,271 + +1.0
2,064,333 + DvMF_1694 0.12 -0.5
2,064,504 - DvMF_1694 0.22 +0.2
2,064,506 + DvMF_1694 0.22 -0.8
2,064,733 + DvMF_1694 0.36 -0.3
2,064,769 - DvMF_1694 0.38 -0.4
2,064,793 + DvMF_1694 0.39 -0.5
2,064,951 + DvMF_1694 0.49 -0.5
2,064,951 + DvMF_1694 0.49 +0.2
2,064,959 - DvMF_1694 0.49 -0.6
2,064,959 - DvMF_1694 0.49 -0.3

Or see this region's nucleotide sequence