Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1540 and DvMF_1541 are separated by 36 nucleotides DvMF_1541 and DvMF_1542 are separated by 222 nucleotides DvMF_1542 and DvMF_1543 are separated by 346 nucleotides
DvMF_1540: DvMF_1540 - H(+)-transporting two-sector ATPase (RefSeq), at 1,901,070 to 1,902,434
_1540
DvMF_1541: DvMF_1541 - TrkA-N domain protein (RefSeq), at 1,902,471 to 1,903,136
_1541
DvMF_1542: DvMF_1542 - protein of unknown function DUF6 transmembrane (RefSeq), at 1,903,359 to 1,904,237
_1542
DvMF_1543: DvMF_1543 - rare lipoprotein A (RefSeq), at 1,904,584 to 1,905,237
_1543
Position (kb)
1903
1904
1905 Strain fitness (log2 ratio)
-1
0
1 at 1902.526 kb on + strand at 1902.546 kb on - strand, within DvMF_1541 at 1902.619 kb on - strand, within DvMF_1541 at 1903.165 kb on - strand at 1903.186 kb on - strand at 1903.316 kb on - strand at 1903.755 kb on + strand, within DvMF_1542 at 1903.781 kb on - strand, within DvMF_1542 at 1903.797 kb on - strand, within DvMF_1542 at 1903.808 kb on - strand, within DvMF_1542 at 1903.888 kb on + strand, within DvMF_1542 at 1903.896 kb on - strand, within DvMF_1542 at 1904.249 kb on - strand at 1904.447 kb on - strand at 1904.936 kb on + strand, within DvMF_1543
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml remove 1,902,526 + -0.3 1,902,546 - DvMF_1541 0.11 -0.8 1,902,619 - DvMF_1541 0.22 -1.3 1,903,165 - -0.4 1,903,186 - -0.8 1,903,316 - -0.3 1,903,755 + DvMF_1542 0.45 -0.9 1,903,781 - DvMF_1542 0.48 -0.5 1,903,797 - DvMF_1542 0.50 -1.0 1,903,808 - DvMF_1542 0.51 -0.5 1,903,888 + DvMF_1542 0.60 -0.3 1,903,896 - DvMF_1542 0.61 +0.4 1,904,249 - -0.0 1,904,447 - +0.4 1,904,936 + DvMF_1543 0.54 +0.3
Or see this region's nucleotide sequence