Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1471 and DvMF_1472 are separated by 459 nucleotides DvMF_1472 and DvMF_1473 are separated by 147 nucleotides DvMF_1473 and DvMF_1474 are separated by 726 nucleotides
DvMF_1471: DvMF_1471 - hypothetical protein (RefSeq), at 1,802,483 to 1,803,349
_1471
DvMF_1472: DvMF_1472 - hypothetical protein (RefSeq), at 1,803,809 to 1,804,150
_1472
DvMF_1473: DvMF_1473 - anaerobic ribonucleoside triphosphate reductase (RefSeq), at 1,804,298 to 1,806,412
_1473
DvMF_1474: DvMF_1474 - flagellin domain protein (RefSeq), at 1,807,139 to 1,807,966
_1474
Position (kb)
1804
1805
1806
1807 Strain fitness (log2 ratio)
-2
-1
0
1 at 1804.091 kb on + strand, within DvMF_1472 at 1804.196 kb on + strand at 1804.226 kb on - strand at 1804.274 kb on - strand at 1804.465 kb on - strand at 1804.914 kb on + strand, within DvMF_1473 at 1805.175 kb on + strand, within DvMF_1473 at 1805.185 kb on + strand, within DvMF_1473 at 1805.194 kb on - strand, within DvMF_1473 at 1805.361 kb on + strand, within DvMF_1473 at 1805.450 kb on + strand, within DvMF_1473 at 1805.911 kb on + strand, within DvMF_1473 at 1806.291 kb on + strand at 1806.349 kb on + strand at 1806.674 kb on - strand at 1806.837 kb on - strand at 1807.069 kb on + strand at 1807.262 kb on - strand, within DvMF_1474
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml remove 1,804,091 + DvMF_1472 0.82 -0.9 1,804,196 + -0.3 1,804,226 - -0.3 1,804,274 - -0.6 1,804,465 - -0.9 1,804,914 + DvMF_1473 0.29 -1.8 1,805,175 + DvMF_1473 0.41 -1.0 1,805,185 + DvMF_1473 0.42 -0.6 1,805,194 - DvMF_1473 0.42 -1.2 1,805,361 + DvMF_1473 0.50 -1.2 1,805,450 + DvMF_1473 0.54 -0.6 1,805,911 + DvMF_1473 0.76 -1.8 1,806,291 + -1.0 1,806,349 + -0.6 1,806,674 - -0.7 1,806,837 - -0.3 1,807,069 + -0.6 1,807,262 - DvMF_1474 0.15 -1.2
Or see this region's nucleotide sequence