Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1455

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrplL and rpoB are separated by 662 nucleotidesrpoB and DvMF_1456 are separated by 260 nucleotides DvMF_1454: rplL - 50S ribosomal protein L7/L12 (RefSeq), at 1,774,806 to 1,775,189 rplL DvMF_1455: rpoB - DNA-directed RNA polymerase subunit beta (RefSeq), at 1,775,852 to 1,779,970 rpoB DvMF_1456: DvMF_1456 - DNA-directed RNA polymerase, beta' subunit (RefSeq), at 1,780,231 to 1,784,388 _1456 Position (kb) 1775 1776 1777 1778 1779 1780Strain fitness (log2 ratio) -2 -1 0 1at 1775.421 kb on - strandat 1775.572 kb on + strandat 1775.573 kb on - strandat 1775.630 kb on + strandat 1775.630 kb on + strandat 1775.638 kb on - strandat 1775.648 kb on - strandat 1775.788 kb on + strandat 1780.094 kb on - strandat 1780.180 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
remove
1,775,421 - -1.9
1,775,572 + +0.4
1,775,573 - -1.1
1,775,630 + -0.1
1,775,630 + +0.4
1,775,638 - -0.8
1,775,648 - -0.6
1,775,788 + -0.6
1,780,094 - -0.2
1,780,180 - +0.5

Or see this region's nucleotide sequence