Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1386

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1384 and DvMF_1385 are separated by 278 nucleotidesDvMF_1385 and DvMF_1386 are separated by 235 nucleotidesDvMF_1386 and DvMF_1387 overlap by 29 nucleotidesDvMF_1387 and DvMF_1388 are separated by 3 nucleotides DvMF_1384: DvMF_1384 - hypothetical protein (RefSeq), at 1,693,864 to 1,694,442 _1384 DvMF_1385: DvMF_1385 - pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein (RefSeq), at 1,694,721 to 1,695,182 _1385 DvMF_1386: DvMF_1386 - ATP synthase protein I (RefSeq), at 1,695,418 to 1,695,693 _1386 DvMF_1387: DvMF_1387 - ATP synthase I (RefSeq), at 1,695,665 to 1,696,099 _1387 DvMF_1388: DvMF_1388 - ATP synthase F0, A subunit (RefSeq), at 1,696,103 to 1,696,804 _1388 Position (kb) 1695 1696Strain fitness (log2 ratio) -2 -1 0 1at 1694.688 kb on - strandat 1694.821 kb on + strand, within DvMF_1385at 1694.821 kb on + strand, within DvMF_1385at 1694.821 kb on + strand, within DvMF_1385at 1694.821 kb on + strand, within DvMF_1385at 1694.871 kb on + strand, within DvMF_1385at 1694.936 kb on + strand, within DvMF_1385at 1694.981 kb on + strand, within DvMF_1385at 1694.981 kb on + strand, within DvMF_1385at 1695.101 kb on + strand, within DvMF_1385at 1695.169 kb on - strandat 1695.212 kb on - strandat 1695.332 kb on - strandat 1695.524 kb on - strand, within DvMF_1386

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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1,694,688 - -0.5
1,694,821 + DvMF_1385 0.22 -0.3
1,694,821 + DvMF_1385 0.22 -0.4
1,694,821 + DvMF_1385 0.22 -0.8
1,694,821 + DvMF_1385 0.22 -0.8
1,694,871 + DvMF_1385 0.32 -0.9
1,694,936 + DvMF_1385 0.47 +0.5
1,694,981 + DvMF_1385 0.56 +0.1
1,694,981 + DvMF_1385 0.56 -0.5
1,695,101 + DvMF_1385 0.82 -0.1
1,695,169 - -0.3
1,695,212 - -0.9
1,695,332 - -0.1
1,695,524 - DvMF_1386 0.38 -1.8

Or see this region's nucleotide sequence