Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1384 and DvMF_1385 are separated by 278 nucleotides DvMF_1385 and DvMF_1386 are separated by 235 nucleotides DvMF_1386 and DvMF_1387 overlap by 29 nucleotides DvMF_1387 and DvMF_1388 are separated by 3 nucleotides
DvMF_1384: DvMF_1384 - hypothetical protein (RefSeq), at 1,693,864 to 1,694,442
_1384
DvMF_1385: DvMF_1385 - pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein (RefSeq), at 1,694,721 to 1,695,182
_1385
DvMF_1386: DvMF_1386 - ATP synthase protein I (RefSeq), at 1,695,418 to 1,695,693
_1386
DvMF_1387: DvMF_1387 - ATP synthase I (RefSeq), at 1,695,665 to 1,696,099
_1387
DvMF_1388: DvMF_1388 - ATP synthase F0, A subunit (RefSeq), at 1,696,103 to 1,696,804
_1388
Position (kb)
1695
1696 Strain fitness (log2 ratio)
-2
-1
0
1 at 1694.688 kb on - strand at 1694.821 kb on + strand, within DvMF_1385 at 1694.821 kb on + strand, within DvMF_1385 at 1694.821 kb on + strand, within DvMF_1385 at 1694.821 kb on + strand, within DvMF_1385 at 1694.871 kb on + strand, within DvMF_1385 at 1694.936 kb on + strand, within DvMF_1385 at 1694.981 kb on + strand, within DvMF_1385 at 1694.981 kb on + strand, within DvMF_1385 at 1695.101 kb on + strand, within DvMF_1385 at 1695.169 kb on - strand at 1695.212 kb on - strand at 1695.332 kb on - strand at 1695.524 kb on - strand, within DvMF_1386
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml remove 1,694,688 - -0.5 1,694,821 + DvMF_1385 0.22 -0.3 1,694,821 + DvMF_1385 0.22 -0.4 1,694,821 + DvMF_1385 0.22 -0.8 1,694,821 + DvMF_1385 0.22 -0.8 1,694,871 + DvMF_1385 0.32 -0.9 1,694,936 + DvMF_1385 0.47 +0.5 1,694,981 + DvMF_1385 0.56 +0.1 1,694,981 + DvMF_1385 0.56 -0.5 1,695,101 + DvMF_1385 0.82 -0.1 1,695,169 - -0.3 1,695,212 - -0.9 1,695,332 - -0.1 1,695,524 - DvMF_1386 0.38 -1.8
Or see this region's nucleotide sequence