Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1330

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1328 and DvMF_1329 are separated by 290 nucleotidesDvMF_1329 and DvMF_1330 are separated by 75 nucleotidesDvMF_1330 and DvMF_1331 are separated by 170 nucleotides DvMF_1328: DvMF_1328 - heavy metal-binding domain-containing protein (RefSeq), at 1,623,700 to 1,623,909 _1328 DvMF_1329: DvMF_1329 - hypothetical protein (RefSeq), at 1,624,200 to 1,624,493 _1329 DvMF_1330: DvMF_1330 - RNA modification enzyme, MiaB family (RefSeq), at 1,624,569 to 1,626,005 _1330 DvMF_1331: DvMF_1331 - protein of unknown function DUF151 (RefSeq), at 1,626,176 to 1,626,904 _1331 Position (kb) 1624 1625 1626 1627Strain fitness (log2 ratio) -3 -2 -1 0 1at 1623.744 kb on - strand, within DvMF_1328at 1623.887 kb on + strand, within DvMF_1328at 1624.094 kb on - strandat 1624.126 kb on + strandat 1624.250 kb on - strand, within DvMF_1329at 1624.349 kb on + strand, within DvMF_1329at 1624.414 kb on - strand, within DvMF_1329at 1624.450 kb on - strand, within DvMF_1329at 1624.512 kb on + strandat 1624.666 kb on - strandat 1624.716 kb on + strand, within DvMF_1330at 1624.757 kb on - strand, within DvMF_1330at 1624.821 kb on - strand, within DvMF_1330at 1624.947 kb on + strand, within DvMF_1330at 1625.044 kb on - strand, within DvMF_1330at 1625.327 kb on - strand, within DvMF_1330at 1625.358 kb on - strand, within DvMF_1330at 1625.403 kb on + strand, within DvMF_1330at 1625.708 kb on + strand, within DvMF_1330at 1625.713 kb on + strand, within DvMF_1330at 1625.760 kb on - strand, within DvMF_1330at 1626.303 kb on + strand, within DvMF_1331at 1626.303 kb on + strand, within DvMF_1331at 1626.321 kb on + strand, within DvMF_1331at 1626.495 kb on + strand, within DvMF_1331at 1626.672 kb on - strand, within DvMF_1331at 1626.995 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
remove
1,623,744 - DvMF_1328 0.21 +0.1
1,623,887 + DvMF_1328 0.89 -0.8
1,624,094 - -0.8
1,624,126 + -0.3
1,624,250 - DvMF_1329 0.17 -0.2
1,624,349 + DvMF_1329 0.51 -1.1
1,624,414 - DvMF_1329 0.73 -0.9
1,624,450 - DvMF_1329 0.85 -1.0
1,624,512 + -0.5
1,624,666 - -0.4
1,624,716 + DvMF_1330 0.10 -1.1
1,624,757 - DvMF_1330 0.13 -3.2
1,624,821 - DvMF_1330 0.18 -1.3
1,624,947 + DvMF_1330 0.26 -1.5
1,625,044 - DvMF_1330 0.33 -0.7
1,625,327 - DvMF_1330 0.53 -1.3
1,625,358 - DvMF_1330 0.55 -1.3
1,625,403 + DvMF_1330 0.58 -0.3
1,625,708 + DvMF_1330 0.79 -2.1
1,625,713 + DvMF_1330 0.80 -0.9
1,625,760 - DvMF_1330 0.83 -0.5
1,626,303 + DvMF_1331 0.17 -0.2
1,626,303 + DvMF_1331 0.17 +0.1
1,626,321 + DvMF_1331 0.20 +0.1
1,626,495 + DvMF_1331 0.44 -0.2
1,626,672 - DvMF_1331 0.68 -0.4
1,626,995 - -0.5

Or see this region's nucleotide sequence