Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1328 and DvMF_1329 are separated by 290 nucleotides DvMF_1329 and DvMF_1330 are separated by 75 nucleotides DvMF_1330 and DvMF_1331 are separated by 170 nucleotides
DvMF_1328: DvMF_1328 - heavy metal-binding domain-containing protein (RefSeq), at 1,623,700 to 1,623,909
_1328
DvMF_1329: DvMF_1329 - hypothetical protein (RefSeq), at 1,624,200 to 1,624,493
_1329
DvMF_1330: DvMF_1330 - RNA modification enzyme, MiaB family (RefSeq), at 1,624,569 to 1,626,005
_1330
DvMF_1331: DvMF_1331 - protein of unknown function DUF151 (RefSeq), at 1,626,176 to 1,626,904
_1331
Position (kb)
1624
1625
1626
1627 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1623.744 kb on - strand, within DvMF_1328 at 1623.887 kb on + strand, within DvMF_1328 at 1624.094 kb on - strand at 1624.126 kb on + strand at 1624.250 kb on - strand, within DvMF_1329 at 1624.349 kb on + strand, within DvMF_1329 at 1624.414 kb on - strand, within DvMF_1329 at 1624.450 kb on - strand, within DvMF_1329 at 1624.512 kb on + strand at 1624.666 kb on - strand at 1624.716 kb on + strand, within DvMF_1330 at 1624.757 kb on - strand, within DvMF_1330 at 1624.821 kb on - strand, within DvMF_1330 at 1624.947 kb on + strand, within DvMF_1330 at 1625.044 kb on - strand, within DvMF_1330 at 1625.327 kb on - strand, within DvMF_1330 at 1625.358 kb on - strand, within DvMF_1330 at 1625.403 kb on + strand, within DvMF_1330 at 1625.708 kb on + strand, within DvMF_1330 at 1625.713 kb on + strand, within DvMF_1330 at 1625.760 kb on - strand, within DvMF_1330 at 1626.303 kb on + strand, within DvMF_1331 at 1626.303 kb on + strand, within DvMF_1331 at 1626.321 kb on + strand, within DvMF_1331 at 1626.495 kb on + strand, within DvMF_1331 at 1626.672 kb on - strand, within DvMF_1331 at 1626.995 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml remove 1,623,744 - DvMF_1328 0.21 +0.1 1,623,887 + DvMF_1328 0.89 -0.8 1,624,094 - -0.8 1,624,126 + -0.3 1,624,250 - DvMF_1329 0.17 -0.2 1,624,349 + DvMF_1329 0.51 -1.1 1,624,414 - DvMF_1329 0.73 -0.9 1,624,450 - DvMF_1329 0.85 -1.0 1,624,512 + -0.5 1,624,666 - -0.4 1,624,716 + DvMF_1330 0.10 -1.1 1,624,757 - DvMF_1330 0.13 -3.2 1,624,821 - DvMF_1330 0.18 -1.3 1,624,947 + DvMF_1330 0.26 -1.5 1,625,044 - DvMF_1330 0.33 -0.7 1,625,327 - DvMF_1330 0.53 -1.3 1,625,358 - DvMF_1330 0.55 -1.3 1,625,403 + DvMF_1330 0.58 -0.3 1,625,708 + DvMF_1330 0.79 -2.1 1,625,713 + DvMF_1330 0.80 -0.9 1,625,760 - DvMF_1330 0.83 -0.5 1,626,303 + DvMF_1331 0.17 -0.2 1,626,303 + DvMF_1331 0.17 +0.1 1,626,321 + DvMF_1331 0.20 +0.1 1,626,495 + DvMF_1331 0.44 -0.2 1,626,672 - DvMF_1331 0.68 -0.4 1,626,995 - -0.5
Or see this region's nucleotide sequence