Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1125

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1123 and DvMF_1124 are separated by 150 nucleotidesDvMF_1124 and DvMF_1125 overlap by 1 nucleotidesDvMF_1125 and DvMF_1126 are separated by 545 nucleotides DvMF_1123: DvMF_1123 - queuosine biosynthesis protein QueD (RefSeq), at 1,380,349 to 1,380,717 _1123 DvMF_1124: DvMF_1124 - radical SAM domain protein (RefSeq), at 1,380,868 to 1,381,542 _1124 DvMF_1125: DvMF_1125 - exsB protein (RefSeq), at 1,381,542 to 1,382,261 _1125 DvMF_1126: DvMF_1126 - FAD dependent oxidoreductase (RefSeq), at 1,382,807 to 1,383,985 _1126 Position (kb) 1381 1382 1383Strain fitness (log2 ratio) -2 -1 0 1at 1380.825 kb on - strandat 1380.856 kb on + strandat 1380.921 kb on - strandat 1381.171 kb on + strand, within DvMF_1124at 1381.171 kb on + strand, within DvMF_1124at 1381.280 kb on + strand, within DvMF_1124at 1381.637 kb on + strand, within DvMF_1125at 1381.702 kb on - strand, within DvMF_1125at 1382.199 kb on - strandat 1382.942 kb on + strand, within DvMF_1126at 1383.150 kb on + strand, within DvMF_1126

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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1,380,825 - -0.3
1,380,856 + -0.9
1,380,921 - -0.8
1,381,171 + DvMF_1124 0.45 -1.2
1,381,171 + DvMF_1124 0.45 -2.5
1,381,280 + DvMF_1124 0.61 -1.3
1,381,637 + DvMF_1125 0.13 -1.2
1,381,702 - DvMF_1125 0.22 -1.7
1,382,199 - -1.2
1,382,942 + DvMF_1126 0.11 -1.1
1,383,150 + DvMF_1126 0.29 -0.4

Or see this region's nucleotide sequence