Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1097 and DvMF_1098 are separated by 553 nucleotides DvMF_1098 and DvMF_1099 are separated by 121 nucleotides
DvMF_1097: DvMF_1097 - response regulator receiver modulated metal dependent phosphohydrolase (RefSeq), at 1,342,486 to 1,343,661
_1097
DvMF_1098: DvMF_1098 - glycosyl transferase group 1 (RefSeq), at 1,344,215 to 1,345,441
_1098
DvMF_1099: DvMF_1099 - drug resistance transporter, EmrB/QacA subfamily (RefSeq), at 1,345,563 to 1,347,122
_1099
Position (kb)
1344
1345
1346 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1343.538 kb on - strand, within DvMF_1097 at 1343.798 kb on - strand at 1343.817 kb on + strand at 1343.926 kb on + strand at 1343.934 kb on - strand at 1344.086 kb on - strand at 1344.388 kb on - strand, within DvMF_1098 at 1344.528 kb on - strand, within DvMF_1098 at 1344.593 kb on - strand, within DvMF_1098 at 1344.609 kb on - strand, within DvMF_1098 at 1344.641 kb on + strand, within DvMF_1098 at 1344.801 kb on - strand, within DvMF_1098 at 1344.913 kb on + strand, within DvMF_1098 at 1344.957 kb on + strand, within DvMF_1098 at 1345.073 kb on - strand, within DvMF_1098 at 1345.128 kb on - strand, within DvMF_1098 at 1345.386 kb on + strand at 1345.423 kb on - strand at 1345.583 kb on - strand at 1345.801 kb on + strand, within DvMF_1099 at 1346.007 kb on + strand, within DvMF_1099 at 1346.363 kb on + strand, within DvMF_1099
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml remove 1,343,538 - DvMF_1097 0.89 -0.0 1,343,798 - +0.0 1,343,817 + -0.5 1,343,926 + +0.2 1,343,934 - -0.2 1,344,086 - +0.2 1,344,388 - DvMF_1098 0.14 -3.2 1,344,528 - DvMF_1098 0.26 -1.6 1,344,593 - DvMF_1098 0.31 -0.9 1,344,609 - DvMF_1098 0.32 -2.2 1,344,641 + DvMF_1098 0.35 -4.9 1,344,801 - DvMF_1098 0.48 -4.0 1,344,913 + DvMF_1098 0.57 -3.6 1,344,957 + DvMF_1098 0.60 -3.6 1,345,073 - DvMF_1098 0.70 -2.8 1,345,128 - DvMF_1098 0.74 -2.6 1,345,386 + -2.2 1,345,423 - -0.8 1,345,583 - -0.5 1,345,801 + DvMF_1099 0.15 -1.0 1,346,007 + DvMF_1099 0.28 -0.6 1,346,363 + DvMF_1099 0.51 -2.1
Or see this region's nucleotide sequence