Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1068

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1066 and DvMF_1067 overlap by 4 nucleotidesDvMF_1067 and DvMF_1068 are separated by 77 nucleotidesDvMF_1068 and DvMF_1069 are separated by 74 nucleotides DvMF_1066: DvMF_1066 - hypothetical protein (RefSeq), at 1,307,834 to 1,308,430 _1066 DvMF_1067: DvMF_1067 - hypothetical protein (RefSeq), at 1,308,427 to 1,309,047 _1067 DvMF_1068: DvMF_1068 - hypothetical protein (RefSeq), at 1,309,125 to 1,309,523 _1068 DvMF_1069: DvMF_1069 - hypothetical protein (RefSeq), at 1,309,598 to 1,310,512 _1069 Position (kb) 1309 1310Strain fitness (log2 ratio) -1 0 1at 1308.156 kb on - strand, within DvMF_1066at 1308.312 kb on + strand, within DvMF_1066at 1308.383 kb on + strandat 1308.644 kb on + strand, within DvMF_1067at 1308.721 kb on + strand, within DvMF_1067at 1308.729 kb on + strand, within DvMF_1067at 1309.064 kb on - strandat 1309.112 kb on - strandat 1309.361 kb on + strand, within DvMF_1068at 1309.587 kb on + strandat 1309.615 kb on + strandat 1309.741 kb on - strand, within DvMF_1069at 1310.014 kb on + strand, within DvMF_1069at 1310.188 kb on - strand, within DvMF_1069at 1310.286 kb on + strand, within DvMF_1069

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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1,308,156 - DvMF_1066 0.54 -0.8
1,308,312 + DvMF_1066 0.80 -1.4
1,308,383 + -0.8
1,308,644 + DvMF_1067 0.35 -0.6
1,308,721 + DvMF_1067 0.47 -0.8
1,308,729 + DvMF_1067 0.49 -0.4
1,309,064 - -0.1
1,309,112 - -0.2
1,309,361 + DvMF_1068 0.59 -1.0
1,309,587 + +0.2
1,309,615 + -0.0
1,309,741 - DvMF_1069 0.16 -0.3
1,310,014 + DvMF_1069 0.45 -0.2
1,310,188 - DvMF_1069 0.64 -0.4
1,310,286 + DvMF_1069 0.75 -0.0

Or see this region's nucleotide sequence