Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1011

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1010 and DvMF_1011 are separated by 61 nucleotidesDvMF_1011 and DvMF_1012 are separated by 481 nucleotides DvMF_1010: DvMF_1010 - diaminopimelate decarboxylase (RefSeq), at 1,225,022 to 1,226,287 _1010 DvMF_1011: DvMF_1011 - transcriptional regulator, TrmB (RefSeq), at 1,226,349 to 1,227,122 _1011 DvMF_1012: DvMF_1012 - amidohydrolase (RefSeq), at 1,227,604 to 1,228,806 _1012 Position (kb) 1226 1227 1228Strain fitness (log2 ratio) -1 0 1at 1225.492 kb on + strand, within DvMF_1010at 1225.500 kb on - strand, within DvMF_1010at 1225.500 kb on - strand, within DvMF_1010at 1225.609 kb on + strand, within DvMF_1010at 1225.710 kb on - strand, within DvMF_1010at 1225.774 kb on + strand, within DvMF_1010at 1225.873 kb on + strand, within DvMF_1010at 1225.929 kb on - strand, within DvMF_1010at 1225.929 kb on - strand, within DvMF_1010at 1225.929 kb on - strand, within DvMF_1010at 1225.929 kb on - strand, within DvMF_1010at 1226.050 kb on + strand, within DvMF_1010at 1226.094 kb on + strand, within DvMF_1010at 1226.189 kb on + strandat 1226.261 kb on + strandat 1226.292 kb on - strandat 1226.659 kb on - strand, within DvMF_1011at 1226.681 kb on - strand, within DvMF_1011at 1226.781 kb on - strand, within DvMF_1011at 1227.058 kb on - strandat 1227.231 kb on - strandat 1227.745 kb on - strand, within DvMF_1012at 1227.870 kb on + strand, within DvMF_1012at 1227.870 kb on + strand, within DvMF_1012at 1227.878 kb on - strand, within DvMF_1012at 1227.944 kb on - strand, within DvMF_1012at 1227.986 kb on - strand, within DvMF_1012at 1228.019 kb on - strand, within DvMF_1012at 1228.115 kb on - strand, within DvMF_1012

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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1,225,492 + DvMF_1010 0.37 -0.7
1,225,500 - DvMF_1010 0.38 -0.6
1,225,500 - DvMF_1010 0.38 -0.3
1,225,609 + DvMF_1010 0.46 -0.6
1,225,710 - DvMF_1010 0.54 -0.3
1,225,774 + DvMF_1010 0.59 -0.3
1,225,873 + DvMF_1010 0.67 -0.2
1,225,929 - DvMF_1010 0.72 -0.8
1,225,929 - DvMF_1010 0.72 -0.5
1,225,929 - DvMF_1010 0.72 +0.2
1,225,929 - DvMF_1010 0.72 -0.9
1,226,050 + DvMF_1010 0.81 -0.5
1,226,094 + DvMF_1010 0.85 -0.8
1,226,189 + -0.3
1,226,261 + +0.1
1,226,292 - -0.4
1,226,659 - DvMF_1011 0.40 +0.3
1,226,681 - DvMF_1011 0.43 +0.4
1,226,781 - DvMF_1011 0.56 +0.8
1,227,058 - +1.2
1,227,231 - +0.2
1,227,745 - DvMF_1012 0.12 -0.8
1,227,870 + DvMF_1012 0.22 -0.3
1,227,870 + DvMF_1012 0.22 -0.2
1,227,878 - DvMF_1012 0.23 -0.1
1,227,944 - DvMF_1012 0.28 +0.2
1,227,986 - DvMF_1012 0.32 +0.3
1,228,019 - DvMF_1012 0.34 -0.7
1,228,115 - DvMF_1012 0.42 -0.8

Or see this region's nucleotide sequence