Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0978

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0977 and DvMF_0978 are separated by 199 nucleotidesDvMF_0978 and DvMF_0979 are separated by 227 nucleotides DvMF_0977: DvMF_0977 - Ribulose-phosphate 3-epimerase (RefSeq), at 1,184,879 to 1,185,538 _0977 DvMF_0978: DvMF_0978 - transcriptional regulator, MerR family (RefSeq), at 1,185,738 to 1,186,502 _0978 DvMF_0979: DvMF_0979 - phenylalanyl-tRNA synthetase, beta subunit (RefSeq), at 1,186,730 to 1,189,147 _0979 Position (kb) 1185 1186 1187Strain fitness (log2 ratio) -2 -1 0 1at 1185.626 kb on + strandat 1185.836 kb on + strand, within DvMF_0978at 1185.844 kb on - strand, within DvMF_0978at 1185.992 kb on - strand, within DvMF_0978at 1186.369 kb on + strand, within DvMF_0978at 1186.369 kb on + strand, within DvMF_0978at 1186.377 kb on - strand, within DvMF_0978at 1186.588 kb on - strandat 1186.736 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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1,185,626 + -0.6
1,185,836 + DvMF_0978 0.13 -0.7
1,185,844 - DvMF_0978 0.14 -2.4
1,185,992 - DvMF_0978 0.33 -0.9
1,186,369 + DvMF_0978 0.82 -2.0
1,186,369 + DvMF_0978 0.82 -2.4
1,186,377 - DvMF_0978 0.84 -0.9
1,186,588 - -0.1
1,186,736 - +0.1

Or see this region's nucleotide sequence