Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0919

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0918 and DvMF_0919 are separated by 22 nucleotidesDvMF_0919 and DvMF_0920 are separated by 144 nucleotides DvMF_0918: DvMF_0918 - hypothetical protein (RefSeq), at 1,110,689 to 1,111,306 _0918 DvMF_0919: DvMF_0919 - hypothetical protein (RefSeq), at 1,111,329 to 1,111,865 _0919 DvMF_0920: DvMF_0920 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,112,010 to 1,113,041 _0920 Position (kb) 1111 1112Strain fitness (log2 ratio) -2 -1 0 1at 1110.754 kb on + strand, within DvMF_0918at 1110.759 kb on + strand, within DvMF_0918at 1110.762 kb on - strand, within DvMF_0918at 1110.826 kb on + strand, within DvMF_0918at 1110.984 kb on - strand, within DvMF_0918at 1111.108 kb on + strand, within DvMF_0918at 1111.450 kb on + strand, within DvMF_0919at 1111.462 kb on + strand, within DvMF_0919at 1111.529 kb on - strand, within DvMF_0919at 1111.560 kb on + strand, within DvMF_0919at 1111.816 kb on + strandat 1111.868 kb on - strandat 1112.189 kb on - strand, within DvMF_0920at 1112.203 kb on - strand, within DvMF_0920at 1112.417 kb on + strand, within DvMF_0920at 1112.477 kb on - strand, within DvMF_0920at 1112.601 kb on + strand, within DvMF_0920at 1112.687 kb on - strand, within DvMF_0920at 1112.699 kb on + strand, within DvMF_0920at 1112.699 kb on + strand, within DvMF_0920at 1112.707 kb on - strand, within DvMF_0920

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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1,110,754 + DvMF_0918 0.11 -1.7
1,110,759 + DvMF_0918 0.11 -1.4
1,110,762 - DvMF_0918 0.12 -2.6
1,110,826 + DvMF_0918 0.22 -0.7
1,110,984 - DvMF_0918 0.48 -1.3
1,111,108 + DvMF_0918 0.68 -1.1
1,111,450 + DvMF_0919 0.23 -2.3
1,111,462 + DvMF_0919 0.25 -2.5
1,111,529 - DvMF_0919 0.37 -2.3
1,111,560 + DvMF_0919 0.43 -1.0
1,111,816 + -1.5
1,111,868 - -1.2
1,112,189 - DvMF_0920 0.17 -1.0
1,112,203 - DvMF_0920 0.19 -0.7
1,112,417 + DvMF_0920 0.39 -1.0
1,112,477 - DvMF_0920 0.45 +1.2
1,112,601 + DvMF_0920 0.57 -0.7
1,112,687 - DvMF_0920 0.66 -1.0
1,112,699 + DvMF_0920 0.67 -0.7
1,112,699 + DvMF_0920 0.67 -0.7
1,112,707 - DvMF_0920 0.68 -0.8

Or see this region's nucleotide sequence