Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0786 and DvMF_0787 are separated by 230 nucleotides DvMF_0787 and DvMF_0788 are separated by 341 nucleotides
DvMF_0786: DvMF_0786 - flagellin domain protein (RefSeq), at 943,451 to 944,338
_0786
DvMF_0787: DvMF_0787 - (p)ppGpp synthetase I, SpoT/RelA (RefSeq), at 944,569 to 946,737
_0787
DvMF_0788: DvMF_0788 - extracellular solute-binding protein family 5 (RefSeq), at 947,079 to 948,809
_0788
Position (kb) 944
945
946
947 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 943.948 kb on - strand, within DvMF_0786 at 943.948 kb on - strand, within DvMF_0786 at 943.948 kb on - strand, within DvMF_0786 at 944.060 kb on + strand, within DvMF_0786 at 944.069 kb on + strand, within DvMF_0786 at 944.140 kb on - strand, within DvMF_0786 at 944.140 kb on - strand, within DvMF_0786 at 944.193 kb on - strand, within DvMF_0786 at 944.194 kb on - strand, within DvMF_0786 at 944.293 kb on + strand at 944.360 kb on - strand at 944.535 kb on - strand at 945.416 kb on - strand, within DvMF_0787 at 945.416 kb on - strand, within DvMF_0787 at 945.510 kb on - strand, within DvMF_0787 at 945.571 kb on + strand, within DvMF_0787 at 945.594 kb on + strand, within DvMF_0787 at 945.834 kb on - strand, within DvMF_0787 at 945.868 kb on - strand, within DvMF_0787 at 945.881 kb on + strand, within DvMF_0787 at 946.399 kb on - strand, within DvMF_0787 at 946.530 kb on + strand at 946.584 kb on + strand at 946.621 kb on - strand at 947.009 kb on + strand at 947.084 kb on - strand at 947.108 kb on - strand at 947.394 kb on - strand, within DvMF_0788 at 947.667 kb on - strand, within DvMF_0788
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml remove 943,948 - DvMF_0786 0.56 -1.2 943,948 - DvMF_0786 0.56 +0.7 943,948 - DvMF_0786 0.56 -0.3 944,060 + DvMF_0786 0.69 -0.5 944,069 + DvMF_0786 0.70 -0.5 944,140 - DvMF_0786 0.78 -0.6 944,140 - DvMF_0786 0.78 +0.2 944,193 - DvMF_0786 0.84 -0.8 944,194 - DvMF_0786 0.84 -0.4 944,293 + -0.4 944,360 - -0.5 944,535 - -0.1 945,416 - DvMF_0787 0.39 -0.4 945,416 - DvMF_0787 0.39 -0.2 945,510 - DvMF_0787 0.43 -0.4 945,571 + DvMF_0787 0.46 -3.6 945,594 + DvMF_0787 0.47 -3.7 945,834 - DvMF_0787 0.58 -3.0 945,868 - DvMF_0787 0.60 -2.8 945,881 + DvMF_0787 0.60 -2.4 946,399 - DvMF_0787 0.84 -0.6 946,530 + -2.1 946,584 + -2.2 946,621 - -0.4 947,009 + -0.6 947,084 - -0.7 947,108 - -0.1 947,394 - DvMF_0788 0.18 +0.0 947,667 - DvMF_0788 0.34 -0.8
Or see this region's nucleotide sequence