Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0748

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0747 and DvMF_0748 are separated by 83 nucleotidesDvMF_0748 and DvMF_0749 are separated by 9 nucleotides DvMF_0747: DvMF_0747 - hypothetical protein (RefSeq), at 894,257 to 895,699 _0747 DvMF_0748: DvMF_0748 - hypothetical protein (RefSeq), at 895,783 to 896,154 _0748 DvMF_0749: DvMF_0749 - Baseplate J family protein (RefSeq), at 896,164 to 897,225 _0749 Position (kb) 895 896 897Strain fitness (log2 ratio) -2 -1 0 1at 895.775 kb on - strandat 895.993 kb on - strand, within DvMF_0748at 896.118 kb on + strandat 896.176 kb on + strandat 896.203 kb on + strandat 896.659 kb on - strand, within DvMF_0749at 896.659 kb on - strand, within DvMF_0749at 896.659 kb on - strand, within DvMF_0749at 896.968 kb on + strand, within DvMF_0749at 896.998 kb on + strand, within DvMF_0749at 897.076 kb on - strand, within DvMF_0749

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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895,775 - -0.8
895,993 - DvMF_0748 0.56 -1.8
896,118 + +0.4
896,176 + -0.5
896,203 + -0.1
896,659 - DvMF_0749 0.47 +0.0
896,659 - DvMF_0749 0.47 -0.5
896,659 - DvMF_0749 0.47 +0.4
896,968 + DvMF_0749 0.76 -0.5
896,998 + DvMF_0749 0.79 -1.0
897,076 - DvMF_0749 0.86 -0.8

Or see this region's nucleotide sequence