Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0611

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0610 and DvMF_0611 are separated by 4 nucleotidesDvMF_0611 and proA are separated by 483 nucleotides DvMF_0610: DvMF_0610 - indolepyruvate ferredoxin oxidoreductase, alpha subunit (RefSeq), at 722,212 to 724,101 _0610 DvMF_0611: DvMF_0611 - hypothetical protein (RefSeq), at 724,106 to 724,801 _0611 DvMF_0612: proA - gamma-glutamyl phosphate reductase (RefSeq), at 725,285 to 726,595 proA Position (kb) 724 725Strain fitness (log2 ratio) -3 -2 -1 0 1at 723.371 kb on + strand, within DvMF_0610at 723.371 kb on + strand, within DvMF_0610at 723.379 kb on - strand, within DvMF_0610at 723.403 kb on - strand, within DvMF_0610at 723.569 kb on - strand, within DvMF_0610at 723.601 kb on - strand, within DvMF_0610at 723.815 kb on + strand, within DvMF_0610at 724.011 kb on - strandat 724.298 kb on + strand, within DvMF_0611at 724.375 kb on + strand, within DvMF_0611at 724.566 kb on - strand, within DvMF_0611at 724.812 kb on - strandat 724.975 kb on - strandat 725.019 kb on - strandat 725.051 kb on + strandat 725.061 kb on - strandat 725.063 kb on + strandat 725.085 kb on + strandat 725.784 kb on + strand, within proA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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723,371 + DvMF_0610 0.61 -2.9
723,371 + DvMF_0610 0.61 -1.5
723,379 - DvMF_0610 0.62 -2.5
723,403 - DvMF_0610 0.63 -1.0
723,569 - DvMF_0610 0.72 -1.0
723,601 - DvMF_0610 0.73 -1.4
723,815 + DvMF_0610 0.85 -3.1
724,011 - -1.7
724,298 + DvMF_0611 0.28 -1.0
724,375 + DvMF_0611 0.39 -1.4
724,566 - DvMF_0611 0.66 -1.2
724,812 - -0.6
724,975 - -0.5
725,019 - -0.7
725,051 + -1.5
725,061 - -0.2
725,063 + +0.6
725,085 + +1.0
725,784 + proA DvMF_0612 0.38 -0.4

Or see this region's nucleotide sequence