Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0553

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0552 and DvMF_0553 are separated by 206 nucleotidesDvMF_0553 and lnt are separated by 326 nucleotides DvMF_0552: DvMF_0552 - hypothetical protein (RefSeq), at 651,285 to 652,688 _0552 DvMF_0553: DvMF_0553 - CBS domain containing protein (RefSeq), at 652,895 to 653,716 _0553 DvMF_0554: lnt - apolipoprotein N-acyltransferase (RefSeq), at 654,043 to 655,611 lnt Position (kb) 652 653 654Strain fitness (log2 ratio) -2 -1 0 1at 652.055 kb on - strand, within DvMF_0552at 652.175 kb on - strand, within DvMF_0552at 652.210 kb on - strand, within DvMF_0552at 652.558 kb on - strandat 652.648 kb on + strandat 652.749 kb on - strandat 652.851 kb on - strandat 653.079 kb on - strand, within DvMF_0553at 653.098 kb on - strand, within DvMF_0553at 653.677 kb on + strandat 653.886 kb on + strandat 653.918 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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652,055 - DvMF_0552 0.55 -0.5
652,175 - DvMF_0552 0.63 -1.1
652,210 - DvMF_0552 0.66 -0.3
652,558 - -0.4
652,648 + -0.9
652,749 - -0.4
652,851 - -0.5
653,079 - DvMF_0553 0.22 -2.1
653,098 - DvMF_0553 0.25 -1.3
653,677 + -0.5
653,886 + +0.3
653,918 + -0.4

Or see this region's nucleotide sequence